Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG52_RS00855 Genome accession   NZ_CP094157
Coordinates   182643..182924 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe0021     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 177643..187924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG52_RS00835 (MPG52_00835) groES 178209..178565 (-) 357 WP_000671963.1 co-chaperone GroES -
  MPG52_RS00840 (MPG52_00840) dnaG 178851..180530 (+) 1680 WP_245076803.1 DNA primase -
  MPG52_RS00845 (MPG52_00845) - 180527..181579 (+) 1053 WP_245076805.1 MnmA/TRMU family protein -
  MPG52_RS00850 (MPG52_00850) - 181671..182498 (+) 828 WP_245076807.1 DUF5718 family protein -
  MPG52_RS00855 (MPG52_00855) comB2 182643..182924 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG52_RS00860 (MPG52_00860) comB3 182924..183187 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  MPG52_RS00865 (MPG52_00865) comB4 183189..185552 (+) 2364 WP_245076809.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG52_RS00875 (MPG52_00875) - 185852..187192 (+) 1341 WP_245076811.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667749 MPG52_RS00855 WP_001272686.1 182643..182924(+) (comB2) [Helicobacter pylori strain Hpfe0021]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667749 MPG52_RS00855 WP_001272686.1 182643..182924(+) (comB2) [Helicobacter pylori strain Hpfe0021]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATTCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCTCCGAGTTTAGCAAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment