Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG67_RS07065 Genome accession   NZ_CP094156
Coordinates   1473009..1474322 (-) Length   437 a.a.
NCBI ID   WP_245072802.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe005     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1468009..1479322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG67_RS07035 (MPG67_07035) nadC 1468472..1469293 (-) 822 WP_245050519.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG67_RS07040 (MPG67_07040) nadA 1469293..1470303 (-) 1011 WP_245050521.1 quinolinate synthase NadA -
  MPG67_RS07045 (MPG67_07045) - 1470293..1471096 (-) 804 WP_245072801.1 phosphatidylserine decarboxylase -
  MPG67_RS07050 (MPG67_07050) - 1471090..1471596 (-) 507 WP_154403895.1 helix-turn-helix domain-containing protein -
  MPG67_RS07055 (MPG67_07055) - 1471609..1472103 (-) 495 WP_180582809.1 hypothetical protein -
  MPG67_RS07060 (MPG67_07060) mqnP 1472096..1472980 (-) 885 WP_024422554.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG67_RS07065 (MPG67_07065) comEC/comE3 1473009..1474322 (-) 1314 WP_245072802.1 ComEC/Rec2 family competence protein Machinery gene
  MPG67_RS07070 (MPG67_07070) - 1474319..1475779 (-) 1461 WP_231254193.1 replicative DNA helicase -
  MPG67_RS07075 (MPG67_07075) - 1475790..1477184 (-) 1395 WP_245072804.1 NAD(P)H-hydrate dehydratase -
  MPG67_RS07080 (MPG67_07080) crdS 1477187..1478389 (-) 1203 WP_245073370.1 copper-sensing histidine kinase CrdS -
  MPG67_RS07085 (MPG67_07085) crdR 1478355..1478996 (-) 642 WP_245050533.1 copper response regulator transcription factor CrdR -
  MPG67_RS07090 (MPG67_07090) - 1479082..1479306 (-) 225 Protein_1389 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49979.82 Da        Isoelectric Point: 9.8315

>NTDB_id=667742 MPG67_RS07065 WP_245072802.1 1473009..1474322(-) (comEC/comE3) [Helicobacter pylori strain Hpfe005]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSFNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKNSSFLVRSFQVISLS
TLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLLLHAVGLGSLLDSILNMPLTIPTISVSSPLWLLGAHLFLT
ILSVRFFKVYVSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667742 MPG67_RS07065 WP_245072802.1 1473009..1474322(-) (comEC/comE3) [Helicobacter pylori strain Hpfe005]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGTTTTAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTATATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAATGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAGCACACTCAAGCCTTTTTTAAAAACTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
ACGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTGAGCGTGCGTTTTTTTAAAGTTTATGTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.364

100

0.934

Multiple sequence alignment