Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG67_RS05585 Genome accession   NZ_CP094156
Coordinates   1167558..1167962 (-) Length   134 a.a.
NCBI ID   WP_245072610.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1162558..1172962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG67_RS05545 (MPG67_05545) - 1162699..1163826 (-) 1128 WP_245072608.1 hypothetical protein -
  MPG67_RS05550 (MPG67_05550) - 1163816..1164601 (-) 786 WP_245072609.1 hypothetical protein -
  MPG67_RS05555 (MPG67_05555) - 1164601..1164987 (-) 387 WP_245050216.1 DUF1294 domain-containing protein -
  MPG67_RS05560 (MPG67_05560) - 1165312..1165473 (-) 162 WP_014536434.1 lysozyme -
  MPG67_RS05565 (MPG67_05565) - 1165493..1165987 (-) 495 WP_245050217.1 lysozyme -
  MPG67_RS05570 (MPG67_05570) - 1165998..1166558 (-) 561 WP_245050218.1 hypothetical protein -
  MPG67_RS05575 (MPG67_05575) - 1166542..1166880 (-) 339 WP_017280149.1 hypothetical protein -
  MPG67_RS05580 (MPG67_05580) - 1167071..1167427 (-) 357 WP_245020220.1 tetratricopeptide repeat protein -
  MPG67_RS05585 (MPG67_05585) dprB 1167558..1167962 (-) 405 WP_245072610.1 Holliday junction resolvase RuvX Machinery gene
  MPG67_RS05590 (MPG67_05590) dprA 1167959..1168759 (-) 801 WP_245050220.1 DNA-processing protein DprA Machinery gene
  MPG67_RS05595 (MPG67_05595) minE 1168771..1169004 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG67_RS05600 (MPG67_05600) minD 1169001..1169807 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG67_RS05605 (MPG67_05605) ilvC 1169826..1170818 (-) 993 WP_245050221.1 ketol-acid reductoisomerase -
  MPG67_RS05615 (MPG67_05615) - 1171067..1171849 (+) 783 WP_245050223.1 NAD+ synthase -
  MPG67_RS05620 (MPG67_05620) - 1171846..1172784 (+) 939 WP_245072612.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15324.82 Da        Isoelectric Point: 8.2605

>NTDB_id=667738 MPG67_RS05585 WP_245072610.1 1167558..1167962(-) (dprB) [Helicobacter pylori strain Hpfe005]
MILACDVGLKRIGIAMLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILECYYQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667738 MPG67_RS05585 WP_245072610.1 1167558..1167962(-) (dprB) [Helicobacter pylori strain Hpfe005]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATCTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGTCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGTGCTATTATCAGCAGGTTTTGAAAGATC
GCTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933

Multiple sequence alignment