Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF98_RS07160 Genome accession   NZ_CP094153
Coordinates   1485097..1485378 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1480097..1490378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF98_RS07140 (MPF98_07140) - 1480827..1482257 (-) 1431 WP_245049199.1 COG3014 family protein -
  MPF98_RS07150 (MPF98_07150) comB4 1482468..1484831 (-) 2364 WP_245049201.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF98_RS07155 (MPF98_07155) comB3 1484834..1485097 (-) 264 WP_245049202.1 competence protein ComB Machinery gene
  MPF98_RS07160 (MPF98_07160) comB2 1485097..1485378 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF98_RS07165 (MPF98_07165) - 1485523..1486350 (-) 828 WP_245049204.1 DUF5718 family protein -
  MPF98_RS07170 (MPF98_07170) - 1486441..1487493 (-) 1053 WP_180390906.1 MnmA/TRMU family protein -
  MPF98_RS07175 (MPF98_07175) dnaG 1487490..1489169 (-) 1680 WP_245049206.1 DNA primase -
  MPF98_RS07180 (MPF98_07180) groES 1489446..1489802 (+) 357 WP_245049208.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667723 MPF98_RS07160 WP_001272686.1 1485097..1485378(-) (comB2) [Helicobacter pylori strain Hpfe010]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667723 MPF98_RS07160 WP_001272686.1 1485097..1485378(-) (comB2) [Helicobacter pylori strain Hpfe010]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGCTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAGGAGATTTTATTCACGATCCTTGGCGTAGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment