Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPF98_RS07155 Genome accession   NZ_CP094153
Coordinates   1484834..1485097 (-) Length   87 a.a.
NCBI ID   WP_245049202.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1479834..1490097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF98_RS07140 (MPF98_07140) - 1480827..1482257 (-) 1431 WP_245049199.1 COG3014 family protein -
  MPF98_RS07150 (MPF98_07150) comB4 1482468..1484831 (-) 2364 WP_245049201.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF98_RS07155 (MPF98_07155) comB3 1484834..1485097 (-) 264 WP_245049202.1 competence protein ComB Machinery gene
  MPF98_RS07160 (MPF98_07160) comB2 1485097..1485378 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF98_RS07165 (MPF98_07165) - 1485523..1486350 (-) 828 WP_245049204.1 DUF5718 family protein -
  MPF98_RS07170 (MPF98_07170) - 1486441..1487493 (-) 1053 WP_180390906.1 MnmA/TRMU family protein -
  MPF98_RS07175 (MPF98_07175) dnaG 1487490..1489169 (-) 1680 WP_245049206.1 DNA primase -
  MPF98_RS07180 (MPF98_07180) groES 1489446..1489802 (+) 357 WP_245049208.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10018.14 Da        Isoelectric Point: 9.8943

>NTDB_id=667722 MPF98_RS07155 WP_245049202.1 1484834..1485097(-) (comB3) [Helicobacter pylori strain Hpfe010]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIGLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667722 MPF98_RS07155 WP_245049202.1 1484834..1485097(-) (comB3) [Helicobacter pylori strain Hpfe010]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGGTTTGTTGAGTGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

95.402

100

0.954

Multiple sequence alignment