Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF98_RS07025 Genome accession   NZ_CP094153
Coordinates   1457213..1458526 (-) Length   437 a.a.
NCBI ID   WP_245049180.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe010     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1452213..1463526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF98_RS06995 (MPF98_06995) nadC 1452676..1453497 (-) 822 WP_245049174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPF98_RS07000 (MPF98_07000) nadA 1453497..1454507 (-) 1011 WP_245049176.1 quinolinate synthase NadA -
  MPF98_RS07005 (MPF98_07005) - 1454497..1455300 (-) 804 WP_245049178.1 phosphatidylserine decarboxylase -
  MPF98_RS07010 (MPF98_07010) - 1455297..1455800 (-) 504 WP_000953083.1 hypothetical protein -
  MPF98_RS07015 (MPF98_07015) - 1455813..1456307 (-) 495 WP_017281584.1 hypothetical protein -
  MPF98_RS07020 (MPF98_07020) mqnP 1456300..1457184 (-) 885 WP_180615106.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF98_RS07025 (MPF98_07025) comEC/comE3 1457213..1458526 (-) 1314 WP_245049180.1 ComEC/Rec2 family competence protein Machinery gene
  MPF98_RS07030 (MPF98_07030) - 1458523..1459989 (-) 1467 WP_245049182.1 replicative DNA helicase -
  MPF98_RS07035 (MPF98_07035) - 1460000..1461393 (-) 1394 Protein_1370 NAD(P)H-hydrate dehydratase -
  MPF98_RS07040 (MPF98_07040) crdS 1461396..1462598 (-) 1203 WP_245050038.1 copper-sensing histidine kinase CrdS -
  MPF98_RS07045 (MPF98_07045) crdR 1462564..1463205 (-) 642 WP_017280897.1 copper response regulator transcription factor CrdR -
  MPF98_RS07050 (MPF98_07050) - 1463288..1463515 (-) 228 Protein_1373 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49976.88 Da        Isoelectric Point: 9.8515

>NTDB_id=667719 MPF98_RS07025 WP_245049180.1 1457213..1458526(-) (comEC/comE3) [Helicobacter pylori strain Hpfe010]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKFQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDGILNMPLMIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667719 MPF98_RS07025 WP_245049180.1 1457213..1458526(-) (comEC/comE3) [Helicobacter pylori strain Hpfe010]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTGGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGTTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGTTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAGCACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment