Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF98_RS05575 Genome accession   NZ_CP094153
Coordinates   1165280..1165684 (-) Length   134 a.a.
NCBI ID   WP_245048895.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1160280..1170684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF98_RS05535 (MPF98_05535) - 1160372..1161457 (-) 1086 WP_180518514.1 hypothetical protein -
  MPF98_RS05540 (MPF98_05540) - 1161447..1162232 (-) 786 WP_245048888.1 hypothetical protein -
  MPF98_RS05545 (MPF98_05545) - 1162232..1162613 (-) 382 Protein_1075 DUF1294 domain-containing protein -
  MPF98_RS05550 (MPF98_05550) - 1162940..1163101 (-) 162 WP_017283988.1 hypothetical protein -
  MPF98_RS05555 (MPF98_05555) - 1163150..1163602 (-) 453 WP_245048890.1 glycoside hydrolase family protein -
  MPF98_RS05560 (MPF98_05560) - 1163631..1164191 (-) 561 WP_245048892.1 hypothetical protein -
  MPF98_RS05565 (MPF98_05565) - 1164175..1164513 (-) 339 WP_015087093.1 hypothetical protein -
  MPF98_RS05570 (MPF98_05570) - 1164701..1165156 (-) 456 WP_245048894.1 tetratricopeptide repeat protein -
  MPF98_RS05575 (MPF98_05575) dprB 1165280..1165684 (-) 405 WP_245048895.1 Holliday junction resolvase RuvX Machinery gene
  MPF98_RS05580 (MPF98_05580) dprA 1165681..1166481 (-) 801 WP_245048897.1 DNA-processing protein DprA Machinery gene
  MPF98_RS05585 (MPF98_05585) minE 1166493..1166726 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPF98_RS05590 (MPF98_05590) minD 1166723..1167529 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPF98_RS05595 (MPF98_05595) ilvC 1167553..1168545 (-) 993 WP_245048899.1 ketol-acid reductoisomerase -
  MPF98_RS05605 (MPF98_05605) - 1168793..1169575 (+) 783 WP_245048901.1 NAD+ synthase -
  MPF98_RS05610 (MPF98_05610) - 1169572..1170510 (+) 939 WP_245048903.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15362.94 Da        Isoelectric Point: 8.7023

>NTDB_id=667715 MPF98_RS05575 WP_245048895.1 1165280..1165684(-) (dprB) [Helicobacter pylori strain Hpfe010]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADMNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667715 MPF98_RS05575 WP_245048895.1 1165280..1165684(-) (dprB) [Helicobacter pylori strain Hpfe010]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTGCCCTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACATGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCTAGTATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955

Multiple sequence alignment