Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPF98_RS02375 Genome accession   NZ_CP094153
Coordinates   472355..472618 (+) Length   87 a.a.
NCBI ID   WP_245049739.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467355..477618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF98_RS02345 (MPF98_02345) - 468598..469460 (-) 863 Protein_447 hypothetical protein -
  MPF98_RS07730 - 469565..470394 (-) 830 Protein_448 hypothetical protein -
  MPF98_RS02360 (MPF98_02360) - 470693..471480 (+) 788 Protein_449 integrase -
  MPF98_RS02365 (MPF98_02365) - 471584..472063 (+) 480 WP_245049737.1 hypothetical protein -
  MPF98_RS02370 (MPF98_02370) comB2 472060..472344 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPF98_RS02375 (MPF98_02375) comB3 472355..472618 (+) 264 WP_245049739.1 competence protein ComB Machinery gene
  MPF98_RS02380 (MPF98_02380) - 472629..472865 (+) 237 WP_001183709.1 hypothetical protein -
  MPF98_RS02385 (MPF98_02385) - 472865..474592 (+) 1728 Protein_454 FtsK/SpoIIIE domain-containing protein -
  MPF98_RS02390 (MPF98_02390) - 474648..475907 (-) 1260 WP_180399382.1 RNA-guided endonuclease TnpB family protein -
  MPF98_RS02395 (MPF98_02395) - 475882..476534 (-) 653 Protein_456 IS607 family transposase -
  MPF98_RS02400 (MPF98_02400) - 476621..477472 (+) 852 Protein_457 transporter -
  MPF98_RS02405 (MPF98_02405) - 477469..477603 (+) 135 WP_000738749.1 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9968.87 Da        Isoelectric Point: 5.7206

>NTDB_id=667709 MPF98_RS02375 WP_245049739.1 472355..472618(+) (comB3) [Helicobacter pylori strain Hpfe010]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAELFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667709 MPF98_RS02375 WP_245049739.1 472355..472618(+) (comB3) [Helicobacter pylori strain Hpfe010]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTAAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTATTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

58.621

100

0.586

Multiple sequence alignment