Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF98_RS02370 Genome accession   NZ_CP094153
Coordinates   472060..472344 (+) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467060..477344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF98_RS02345 (MPF98_02345) - 468598..469460 (-) 863 Protein_447 hypothetical protein -
  MPF98_RS07730 - 469565..470394 (-) 830 Protein_448 hypothetical protein -
  MPF98_RS02360 (MPF98_02360) - 470693..471480 (+) 788 Protein_449 integrase -
  MPF98_RS02365 (MPF98_02365) - 471584..472063 (+) 480 WP_245049737.1 hypothetical protein -
  MPF98_RS02370 (MPF98_02370) comB2 472060..472344 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPF98_RS02375 (MPF98_02375) comB3 472355..472618 (+) 264 WP_245049739.1 competence protein ComB Machinery gene
  MPF98_RS02380 (MPF98_02380) - 472629..472865 (+) 237 WP_001183709.1 hypothetical protein -
  MPF98_RS02385 (MPF98_02385) - 472865..474592 (+) 1728 Protein_454 FtsK/SpoIIIE domain-containing protein -
  MPF98_RS02390 (MPF98_02390) - 474648..475907 (-) 1260 WP_180399382.1 RNA-guided endonuclease TnpB family protein -
  MPF98_RS02395 (MPF98_02395) - 475882..476534 (-) 653 Protein_456 IS607 family transposase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=667708 MPF98_RS02370 WP_000736478.1 472060..472344(+) (comB2) [Helicobacter pylori strain Hpfe010]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=667708 MPF98_RS02370 WP_000736478.1 472060..472344(+) (comB2) [Helicobacter pylori strain Hpfe010]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment