Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG705_RS10270 Genome accession   NZ_CP108857
Coordinates   2326966..2328900 (+) Length   644 a.a.
NCBI ID   WP_405819826.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00838     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2321966..2333900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG705_RS10255 (OG705_10275) - 2323233..2323529 (+) 297 WP_242571847.1 YtxH domain-containing protein -
  OG705_RS10260 (OG705_10280) - 2323609..2325060 (+) 1452 WP_405819823.1 FGGY family carbohydrate kinase -
  OG705_RS10265 (OG705_10285) rcrP 2325233..2326966 (+) 1734 WP_242571849.1 ABC transporter ATP-binding protein Regulator
  OG705_RS10270 (OG705_10290) rcrQ 2326966..2328900 (+) 1935 WP_405819826.1 ABC transporter ATP-binding protein Regulator
  OG705_RS10275 (OG705_10295) - 2328985..2330232 (-) 1248 WP_405819828.1 RNA polymerase sigma factor -
  OG705_RS10280 (OG705_10300) dnaG 2330441..2332363 (-) 1923 WP_405819830.1 DNA primase -
  OG705_RS10285 (OG705_10305) - 2332456..2333733 (-) 1278 WP_242571853.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69533.63 Da        Isoelectric Point: 5.0575

>NTDB_id=667700 OG705_RS10270 WP_405819826.1 2326966..2328900(+) (rcrQ) [Streptomyces sp. NBC_00838]
MSGPGGRMMAAGAGSPSQRSMDFKGSSKRLLRQLAREKVTLWWMVAAGVLSVAASVVGPKILGSATDLIFAGVVGRQTAG
GSDKEETVSRLREEGEGGLADLLSGVDFTPGQGIDFDAVGRVLLVALAVYVAAGLLMLVSTRLSIRVINLTVYRMREDVQ
DKLARLPLSYFDRQQRGEVLSRATNDVDNVSQTLQQTMGQLINSLLTIVGVLGMMLWISPLLALVALVTVPLSVLVATKI
GKRSQPHFVQQWKSTGTLNAHVEEMYTGHALVKVFGRQDESARAFEEQNEALYEAGFKAQFNSGVMQPLMFFISNLNYVL
VAVVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEKDAPSAARPHELRGRVA
LDGVAFRYEPDKPLIEDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTAGRISLDDIDIATMSREDLRSRIGMVLQ
DTWLFGGTIAENIAYGAAREVTREEIEEAARAAHADRFIRTLPDGYETVIDDEGSGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEGLLAARGAYARLYAAQFAQAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=667700 OG705_RS10270 WP_405819826.1 2326966..2328900(+) (rcrQ) [Streptomyces sp. NBC_00838]
ATGAGCGGTCCTGGCGGACGCATGATGGCGGCCGGCGCGGGTTCCCCCTCGCAGCGGTCGATGGACTTCAAGGGATCGAG
CAAGCGGCTGCTGCGGCAGCTCGCGCGCGAGAAGGTCACCCTGTGGTGGATGGTCGCCGCGGGTGTGCTGAGCGTGGCCG
CCTCGGTGGTCGGCCCGAAGATCCTCGGCTCGGCGACCGACCTGATCTTCGCGGGGGTCGTCGGCCGTCAGACAGCGGGG
GGTTCGGACAAGGAGGAGACGGTCTCGCGGCTCCGGGAGGAGGGCGAGGGCGGGCTCGCCGACCTGCTCTCCGGGGTGGA
CTTCACACCGGGGCAGGGCATCGACTTCGACGCGGTCGGCCGGGTCCTGCTGGTGGCGCTTGCCGTGTACGTCGCGGCCG
GGCTGCTGATGCTGGTCTCGACGCGGCTGTCGATCCGGGTCATCAACCTCACCGTCTACCGGATGCGCGAGGACGTGCAG
GACAAGCTGGCGCGGCTGCCGCTGTCGTACTTCGACCGCCAGCAGCGCGGTGAGGTGCTGAGCCGGGCGACGAACGACGT
CGACAACGTCTCGCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTGACGATCGTCGGCGTCCTCGGCA
TGATGCTGTGGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGGTGCTGGTGGCGACGAAGATC
GGCAAGCGCTCGCAGCCGCACTTCGTACAGCAGTGGAAGTCGACGGGCACCCTGAACGCCCATGTCGAGGAGATGTACAC
GGGGCACGCCCTGGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCCCGGGCGTTCGAGGAACAGAACGAGGCGCTGTACG
AGGCCGGGTTCAAGGCGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGTTCTTCATCTCCAACCTCAACTATGTGCTG
GTGGCGGTCGTCGGCGGGCTGCGGGTCGCGTCGGGCACACTGTCGATCGGCGACGTGCAGGCGTTCATCCAGTACTCGCG
CCAGTTCTCGATGCCGCTGACGCAGGTGGCGTCGATGGCCAACCTCGTCCAGTCCGGGGTCGCGTCCGCCGAGCGGATCT
TCGAGCTGCTGGACGCGGACGAGCAGGAGAAGGACGCCCCCTCGGCCGCGCGCCCGCACGAGCTGCGGGGACGGGTGGCG
CTGGACGGCGTGGCGTTCCGCTACGAGCCGGACAAGCCCCTCATCGAGGACCTGTCGCTGTCGGTGGAACCGGGCCAGAC
GGTCGCGATCGTCGGCCCGACGGGCGCGGGGAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGGCCG
GCCGGATCAGTCTGGACGACATCGACATCGCCACCATGTCGCGGGAGGATCTGCGCTCGCGAATAGGAATGGTCCTCCAG
GACACGTGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCGGCGCGCGAGGTCACGCGCGAGGAGATCGA
GGAGGCGGCGCGGGCGGCCCACGCGGACCGTTTCATCCGCACGCTGCCCGACGGCTACGAGACCGTGATCGACGACGAGG
GGTCGGGCGTCAGCGCGGGCGAGAAGCAGCTCATCACGATCGCGCGGGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTG
GACGAGGCGACCAGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGGCTGGCGCACGGGCGGAC
GAGCTTCGTGATCGCGCACCGGCTGTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTCG
AACAGGGCACGCACGAGGGGCTGTTGGCGGCACGGGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTC
GCCGAGGTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-353)

ABC transporter (ABC_tran)

(416-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.354

96.584

0.39

Multiple sequence alignment