Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SAJPND4_RS10330 Genome accession   NZ_AP014653
Coordinates   2054647..2055363 (+) Length   238 a.a.
NCBI ID   WP_060871547.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TMUS2134     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2049647..2060363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAJPND4_RS10300 (SAJPND4_02005) - 2049865..2050490 (+) 626 Protein_1962 nitroreductase family protein -
  SAJPND4_RS10305 (SAJPND4_02006) - 2050851..2051636 (+) 786 WP_000867942.1 carbon-nitrogen family hydrolase -
  SAJPND4_RS15035 - 2052235..2052369 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  SAJPND4_RS10315 (SAJPND4_02008) agrB 2052605..2053174 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  SAJPND4_RS10320 (SAJPND4_02009) - 2053171..2053311 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  SAJPND4_RS10325 (SAJPND4_02010) - 2053336..2054628 (+) 1293 WP_001789596.1 GHKL domain-containing protein -
  SAJPND4_RS10330 (SAJPND4_02011) agrA 2054647..2055363 (+) 717 WP_060871547.1 LytTR family DNA-binding domain-containing protein Regulator
  SAJPND4_RS10335 - 2055435..2055544 (+) 110 Protein_1969 hypothetical protein -
  SAJPND4_RS10340 (SAJPND4_02012) - 2055732..2056691 (-) 960 WP_001253305.1 carbohydrate kinase -
  SAJPND4_RS10345 (SAJPND4_02013) - 2056688..2058172 (-) 1485 WP_000141430.1 sucrose-6-phosphate hydrolase -
  SAJPND4_RS10350 (SAJPND4_02014) - 2058321..2059271 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27833.84 Da        Isoelectric Point: 6.2996

>NTDB_id=66770 SAJPND4_RS10330 WP_060871547.1 2054647..2055363(+) (agrA) [Staphylococcus aureus strain TMUS2134]
MKIFICEDDPKQRENMVTIIKNYIMIGEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=66770 SAJPND4_RS10330 WP_060871547.1 2054647..2055363(+) (agrA) [Staphylococcus aureus strain TMUS2134]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGG
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGCGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996

Multiple sequence alignment