Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG705_RS10265 Genome accession   NZ_CP108857
Coordinates   2325233..2326966 (+) Length   577 a.a.
NCBI ID   WP_242571849.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00838     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2320233..2331966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG705_RS10225 (OG705_10245) - 2320694..2321350 (+) 657 WP_405819817.1 hydrolase -
  OG705_RS10230 (OG705_10250) - 2321479..2321781 (+) 303 WP_405819819.1 GNAT family N-acetyltransferase -
  OG705_RS10235 (OG705_10255) - 2321810..2322115 (+) 306 WP_405819821.1 (4Fe-4S)-binding protein -
  OG705_RS10255 (OG705_10275) - 2323233..2323529 (+) 297 WP_242571847.1 YtxH domain-containing protein -
  OG705_RS10260 (OG705_10280) - 2323609..2325060 (+) 1452 WP_405819823.1 FGGY family carbohydrate kinase -
  OG705_RS10265 (OG705_10285) rcrP 2325233..2326966 (+) 1734 WP_242571849.1 ABC transporter ATP-binding protein Regulator
  OG705_RS10270 (OG705_10290) rcrQ 2326966..2328900 (+) 1935 WP_405819826.1 ABC transporter ATP-binding protein Regulator
  OG705_RS10275 (OG705_10295) - 2328985..2330232 (-) 1248 WP_405819828.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62497.65 Da        Isoelectric Point: 5.5585

>NTDB_id=667699 OG705_RS10265 WP_242571849.1 2325233..2326966(+) (rcrP) [Streptomyces sp. NBC_00838]
MLLRLLRTHLVPYKRAIGLLVVLQLLQTCASLYLPTLNADIIDNGVVTGDTGYIMEFGALMIAVSVVQVLGQIGAVYYGA
RTASALGRDVRAAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMSFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGISVSLIVKRMRPLFRAMQERLDTVNRVLREQITGNRVIRAFVRDEYEKKRFGGANTDLTEMQLATGRLMSL
MFPVVMTVINVSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTRSSVVP
PEDPVLVLRRHGHLEVRGAEFRYPGAEEPVLRDVSLTARPGETTAVIGSTGSGKSTLLGLVPRLVDATAGEVLVDGENVR
GLDPALLAKTVGLVPQKPYLFSGTVATNLRYGNPDATDEELWHALDVAQAKEFVTALEGGLDAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVSTIREADRIIVMDEGRVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=667699 OG705_RS10265 WP_242571849.1 2325233..2326966(+) (rcrP) [Streptomyces sp. NBC_00838]
GTGCTGCTACGACTACTCAGAACCCATCTGGTCCCCTACAAGAGAGCCATCGGTCTGCTGGTGGTGCTCCAACTGCTGCA
GACGTGCGCCTCGCTCTATCTGCCCACCCTCAACGCCGACATCATCGACAACGGTGTCGTGACGGGGGACACGGGCTACA
TCATGGAGTTCGGCGCTCTCATGATCGCCGTCAGCGTCGTCCAGGTCCTCGGCCAGATAGGCGCGGTCTACTACGGCGCG
CGCACCGCGTCGGCCCTCGGCCGTGACGTGCGGGCCGCGATCTTCGACCGGGTGCAGAGCTTCTCCGCCCGTGAGGTCGG
CCAGTTCGGGGCGCCGTCGCTGATCACGCGTACCACCAACGACGTCCAGCAGGTACAGATGCTGGTGCTGATGTCGTTCA
CGCTCATGGTGTCGGCCCCGATCATGTGTGTCGGCGGCATCGTCATGGCGCTCGGCCAGGACGTGCCGCTGTCCGCGGTG
CTGCTCGCCGTCGTGCCGGTCCTCGGCATCTCCGTGAGCCTGATCGTGAAGCGGATGCGCCCGCTGTTCCGCGCCATGCA
GGAGCGGCTGGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACAGGGTCATCCGGGCCTTCGTCCGCGACG
AGTACGAGAAGAAGCGGTTCGGGGGCGCCAACACCGACCTCACCGAGATGCAGCTGGCGACCGGCCGGCTGATGTCACTG
ATGTTCCCGGTCGTGATGACGGTCATCAACGTGTCGTCCGTCGCCGTCGTCTGGTTCGGCGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACGGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTGTGTGCCGAGCGCATCGAGGAGGTGCTGGACACCAGGTCGAGTGTCGTACCG
CCCGAGGATCCGGTGCTGGTGCTGCGCCGGCACGGTCATCTGGAGGTGCGGGGCGCGGAGTTCCGTTACCCGGGGGCCGA
GGAGCCGGTGCTGCGGGATGTGTCACTGACCGCCAGACCGGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCGACACTGCTGGGGCTGGTTCCCCGGCTGGTCGACGCGACGGCCGGCGAGGTGCTGGTGGACGGGGAGAACGTACGC
GGTCTCGATCCGGCGCTGCTGGCCAAGACGGTCGGTCTGGTGCCGCAGAAGCCGTATCTGTTCTCGGGGACGGTGGCGAC
GAACCTGCGGTACGGGAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGACGTGGCGCAGGCCAAGGAGTTCG
TCACCGCTCTGGAGGGCGGGCTGGACGCGCCCGTGGCCCAGGGCGGCACGAACGTCTCCGGCGGGCAGCGCCAGCGCCTC
GCGATCGCGCGCACGCTGGTGCAGCGGCCCGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTGGACTACGCGACGGA
CGCGGCACTGCGCGCGGCTCTCGCGCGCGAGACCGCCGAGGCGACGGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GCGAGGCCGACCGGATCATCGTCATGGACGAGGGCCGGGTGGTCGGTGAGGGGCGCCATCACGAGCTGATGGCCGGGAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.767

99.48

0.406

Multiple sequence alignment