Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG81_RS07185 Genome accession   NZ_CP094151
Coordinates   1511117..1511398 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe019     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1506117..1516398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG81_RS07165 (MPG81_07165) - 1506846..1508186 (-) 1341 WP_245088402.1 hypothetical protein -
  MPG81_RS07175 (MPG81_07175) comB4 1508488..1510851 (-) 2364 WP_245086920.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG81_RS07180 (MPG81_07180) comB3 1510854..1511117 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG81_RS07185 (MPG81_07185) comB2 1511117..1511398 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG81_RS07190 (MPG81_07190) - 1511543..1512370 (-) 828 WP_245086922.1 DUF5718 family protein -
  MPG81_RS07195 (MPG81_07195) - 1512461..1513513 (-) 1053 WP_245086924.1 MnmA/TRMU family protein -
  MPG81_RS07200 (MPG81_07200) dnaG 1513510..1515189 (-) 1680 WP_245086926.1 DNA primase -
  MPG81_RS07205 (MPG81_07205) groES 1515464..1515820 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667696 MPG81_RS07185 WP_001272686.1 1511117..1511398(-) (comB2) [Helicobacter pylori strain Hpfe019]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667696 MPG81_RS07185 WP_001272686.1 1511117..1511398(-) (comB2) [Helicobacter pylori strain Hpfe019]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment