Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG81_RS07015 Genome accession   NZ_CP094151
Coordinates   1472836..1474149 (-) Length   437 a.a.
NCBI ID   WP_245086896.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe019     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1474146..1489102 1472836..1474149 flank -3


Gene organization within MGE regions


Location: 1472836..1489102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG81_RS07015 (MPG81_07015) comEC/comE3 1472836..1474149 (-) 1314 WP_245086896.1 ComEC/Rec2 family competence protein Machinery gene
  MPG81_RS07020 (MPG81_07020) - 1474146..1475606 (-) 1461 WP_245086898.1 replicative DNA helicase -
  MPG81_RS07025 (MPG81_07025) - 1475617..1477011 (-) 1395 WP_245086900.1 NAD(P)H-hydrate dehydratase -
  MPG81_RS07030 (MPG81_07030) crdS 1477014..1478216 (-) 1203 WP_245088396.1 copper-sensing histidine kinase CrdS -
  MPG81_RS07035 (MPG81_07035) crdR 1478182..1478823 (-) 642 WP_001169808.1 copper response regulator transcription factor CrdR -
  MPG81_RS07040 (MPG81_07040) - 1478909..1480180 (-) 1272 Protein_1378 restriction endonuclease subunit R -
  MPG81_RS07045 (MPG81_07045) - 1480196..1480978 (-) 783 WP_154436263.1 site-specific DNA-methyltransferase -
  MPG81_RS07050 (MPG81_07050) - 1480965..1481828 (-) 864 WP_245086902.1 site-specific DNA-methyltransferase -
  MPG81_RS07915 - 1482075..1483505 (+) 1431 WP_280637490.1 site-specific DNA-methyltransferase -
  MPG81_RS07920 - 1483511..1484548 (+) 1038 WP_280637491.1 site-specific DNA-methyltransferase -
  MPG81_RS07060 (MPG81_07060) - 1484558..1487164 (+) 2607 Protein_1383 DEAD/DEAH box helicase family protein -
  MPG81_RS07065 (MPG81_07065) - 1487216..1488474 (-) 1259 Protein_1384 RNA-guided endonuclease TnpB family protein -
  MPG81_RS07070 (MPG81_07070) - 1488449..1489102 (-) 654 WP_220903236.1 IS607-like element IS607 family transposase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50172.18 Da        Isoelectric Point: 9.8315

>NTDB_id=667692 MPG81_RS07015 WP_245086896.1 1472836..1474149(-) (comEC/comE3) [Helicobacter pylori strain Hpfe019]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKISSFLVRSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFGIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLMIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667692 MPG81_RS07015 WP_245086896.1 1472836..1474149(-) (comEC/comE3) [Helicobacter pylori strain Hpfe019]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGTTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTACTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAATCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTGGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment