Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG81_RS05405 Genome accession   NZ_CP094151
Coordinates   1141125..1141529 (-) Length   134 a.a.
NCBI ID   WP_245086430.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1136125..1146529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG81_RS05370 (MPG81_05370) - 1137147..1137932 (-) 786 WP_245086418.1 hypothetical protein -
  MPG81_RS05375 (MPG81_05375) - 1137932..1138318 (-) 387 WP_245086421.1 DUF1294 domain-containing protein -
  MPG81_RS05380 (MPG81_05380) - 1138285..1138461 (-) 177 WP_245086424.1 hypothetical protein -
  MPG81_RS05385 (MPG81_05385) - 1138652..1139308 (-) 657 WP_342370453.1 lysozyme -
  MPG81_RS05390 (MPG81_05390) - 1139337..1139897 (-) 561 WP_180478944.1 hypothetical protein -
  MPG81_RS05395 (MPG81_05395) - 1139881..1140219 (-) 339 WP_000699916.1 hypothetical protein -
  MPG81_RS05400 (MPG81_05400) - 1140407..1140994 (-) 588 WP_280637487.1 tetratricopeptide repeat protein -
  MPG81_RS05405 (MPG81_05405) dprB 1141125..1141529 (-) 405 WP_245086430.1 Holliday junction resolvase RuvX Machinery gene
  MPG81_RS05410 (MPG81_05410) dprA 1141526..1142326 (-) 801 WP_021307525.1 DNA-processing protein DprA Machinery gene
  MPG81_RS05415 (MPG81_05415) minE 1142338..1142571 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG81_RS05420 (MPG81_05420) minD 1142568..1143374 (-) 807 WP_001019043.1 septum site-determining protein MinD -
  MPG81_RS05425 (MPG81_05425) ilvC 1143399..1144391 (-) 993 WP_245086433.1 ketol-acid reductoisomerase -
  MPG81_RS05435 (MPG81_05435) - 1144639..1145421 (+) 783 WP_245086436.1 NAD+ synthase -
  MPG81_RS05440 (MPG81_05440) - 1145418..1146356 (+) 939 WP_245086440.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15267.71 Da        Isoelectric Point: 8.4781

>NTDB_id=667688 MPG81_RS05405 WP_245086430.1 1141125..1141529(-) (dprB) [Helicobacter pylori strain Hpfe019]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIESFIKLLDFKGE
IVFINEDSSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667688 MPG81_RS05405 WP_245086430.1 1141125..1141529(-) (dprB) [Helicobacter pylori strain Hpfe019]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTGAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATCTTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGCTCTAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933

Multiple sequence alignment