Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG81_RS00010 Genome accession   NZ_CP094151
Coordinates   1588..3021 (+) Length   477 a.a.
NCBI ID   WP_245087065.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe019     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG81_RS00005 (MPG81_00005) dnaA 1..1368 (+) 1368 WP_245087063.1 chromosomal replication initiator protein DnaA -
  MPG81_RS00010 (MPG81_00010) comH 1588..3021 (+) 1434 WP_245087065.1 competence protein Machinery gene
  MPG81_RS00020 (MPG81_00020) - 3201..3953 (+) 753 WP_245087067.1 exodeoxyribonuclease III -
  MPG81_RS00025 (MPG81_00025) - 3950..4585 (-) 636 WP_000668030.1 outer membrane protein -
  MPG81_RS00030 (MPG81_00030) - 4589..4942 (-) 354 WP_245087069.1 hypothetical protein -
  MPG81_RS00035 (MPG81_00035) recG 5024..6895 (+) 1872 WP_245087071.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54696.56 Da        Isoelectric Point: 7.1643

>NTDB_id=667677 MPG81_RS00010 WP_245087065.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpfe019]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNVPIQKPQNKPTSSQQSLQNFSYTESKLGSKNPKNSLLQPLAT
PSKISSANEVKTPTNDTKPPLKNSSEDQENNLFITPPTEKTLPNNTPNADTNEHHESNENRDNAEKQAIRDPNVKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISIHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQTWESEYQITTQLVKAVYERPKQDDQTEPTFYETSELAYSSTRKSEITRNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=667677 MPG81_RS00010 WP_245087065.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpfe019]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTCT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCTCTTGATGAA
AAACTTTCTTTAGAAACGACTTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCTTTAAACGTGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTTCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGAATTCTTCAGAAGA
TCAAGAAAACAACCTTTTCATAACACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATACTAATGAAC
ACCATGAAAGCAATGAGAATAGGGATAATGCGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTA
TTCATAAAACAGAACCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGAGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AACGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGATGATCAAACAG
AGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAATGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTATGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCTAAAA
GCACGCCTCTGAGCATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.858

100

0.922

Multiple sequence alignment