Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OHA79_RS41945 Genome accession   NZ_CP108853
Coordinates   9301248..9303431 (-) Length   727 a.a.
NCBI ID   WP_266978010.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00841     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9296248..9308431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA79_RS41930 (OHA79_41940) trxA 9298602..9299057 (+) 456 WP_266978013.1 thioredoxin -
  OHA79_RS41935 (OHA79_41945) - 9299076..9299339 (+) 264 WP_266978012.1 UBP-type zinc finger domain-containing protein -
  OHA79_RS41940 (OHA79_41950) - 9299376..9301079 (+) 1704 WP_266978011.1 FAD-dependent oxidoreductase -
  OHA79_RS41945 (OHA79_41955) recP/tkt 9301248..9303431 (-) 2184 WP_266978010.1 transketolase Machinery gene
  OHA79_RS41950 (OHA79_41960) - 9304188..9304397 (+) 210 WP_266978009.1 ferredoxin -
  OHA79_RS41955 (OHA79_41965) - 9304394..9305776 (+) 1383 WP_266978008.1 FAD/NAD(P)-binding oxidoreductase -
  OHA79_RS41960 (OHA79_41970) - 9305789..9307015 (+) 1227 WP_266978007.1 cytochrome P450 -

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 78250.27 Da        Isoelectric Point: 5.9218

>NTDB_id=667675 OHA79_RS41945 WP_266978010.1 9301248..9303431(-) (recP/tkt) [Streptomyces sp. NBC_00841]
MDERQAATGMIAGRDAKLALPVADTVGWGPLDVRAVDTVRVLAADAVQKVGNGHPGTAMSLAPLAYLLFQQVMRHDPTDD
QWLGRDRFVLSCGHSSLTLYIQLYLSGYGLELQDLKQLRTWGSATPGHPEYRHTRGVEVTTGPLGQGLAAAVGMALAARR
ERGLLDPDAPPGESPFDHHVYVVASDGDLMEGVASEASSLAGHQELGNLVVLYDSNHISIEDDTEISFSEDVAARYSAYG
WQVQTVDFTHTGSYVEDVDALAAAITAAKQDASRPSMIVLRTVIGWPAPTKQNTGKAHGSALGDQEVAATKALLGFDPGR
SFVVEDEVLAHVRKVRERGAAARRQWESVYEKWRAAHPDRAALLDRLRDRRLPDGWADKLPTFPADPAGMATRKASGEVL
TALAPVLPELWGGSADLAGSNNTTMKGEPSFIPVAKQTAEWKGNAYGRTLHFGIREHAMAAILNGIALQSLTRPYGGTFL
VFSDYMRPAVRLAALMRLPATYVWTHDSIGLGEDGPTHQPVEHLAALRAIPGLDVVRPADANETTVCWRTIIEHQDRPAG
LVLTRQPLPVLERGTDTHAPAEEAARGAYVLVDRADGQPDVVLVATGSEVHIALQARELLAAEGYEARVVSMPCREWFHA
QPVAYQNAVLPPAVRARVSVEAAVGQGWRDIVGDAGRIVSLEHFGASADYKRLYQEFDITPQAVVAAALSSIRAASGTVN
PGGERHA

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=667675 OHA79_RS41945 WP_266978010.1 9301248..9303431(-) (recP/tkt) [Streptomyces sp. NBC_00841]
ATGGACGAGCGACAGGCAGCCACCGGAATGATTGCGGGGCGTGATGCGAAGCTCGCACTTCCGGTCGCGGACACGGTGGG
CTGGGGTCCGCTGGATGTACGAGCGGTGGACACCGTGCGCGTTCTGGCCGCTGACGCGGTCCAGAAGGTGGGAAACGGTC
ATCCGGGAACCGCGATGAGCCTGGCCCCGCTGGCCTATCTGCTGTTCCAGCAGGTGATGCGCCACGACCCCACCGATGAC
CAATGGCTGGGACGCGATCGATTCGTGCTCTCCTGCGGGCACTCAAGTCTCACTCTGTACATCCAGTTGTACCTCAGCGG
GTACGGACTGGAGCTGCAGGATCTCAAGCAGCTCCGCACCTGGGGCTCCGCAACGCCGGGGCATCCGGAATACCGCCACA
CCCGGGGTGTGGAGGTCACCACGGGCCCCCTGGGCCAGGGGCTGGCCGCCGCGGTGGGAATGGCGCTGGCGGCACGGCGC
GAGCGCGGGCTGCTGGATCCCGACGCCCCGCCGGGTGAGAGCCCATTCGACCATCACGTGTACGTCGTCGCCTCGGACGG
CGACCTCATGGAAGGAGTCGCATCGGAGGCGAGTTCGCTCGCCGGCCACCAGGAACTGGGCAACCTGGTCGTCCTCTACG
ACTCCAACCACATCTCGATCGAGGACGACACCGAGATCTCGTTCAGCGAGGATGTCGCCGCGCGCTACTCCGCGTACGGA
TGGCAGGTGCAGACTGTCGACTTCACGCACACGGGCTCCTACGTCGAGGACGTCGACGCCCTCGCGGCGGCGATCACGGC
CGCCAAGCAGGACGCTTCGCGACCGTCCATGATCGTGCTGCGTACGGTCATCGGCTGGCCCGCCCCCACGAAGCAGAACA
CCGGCAAGGCCCATGGCTCAGCGCTCGGTGACCAAGAAGTCGCCGCCACCAAGGCCTTGCTGGGCTTCGATCCGGGTCGG
AGCTTTGTCGTGGAGGACGAAGTCCTGGCCCACGTCAGGAAGGTGCGGGAGCGGGGCGCTGCTGCGCGTCGCCAGTGGGA
GAGCGTGTATGAGAAGTGGCGCGCCGCCCATCCTGACCGGGCCGCGCTGCTTGACCGGTTGCGCGACCGGCGTCTGCCCG
ATGGCTGGGCCGACAAGCTGCCGACTTTCCCCGCCGACCCTGCCGGAATGGCCACGCGCAAGGCATCCGGCGAGGTGCTG
ACGGCGCTGGCGCCCGTCCTGCCCGAACTGTGGGGTGGATCCGCCGATCTTGCGGGGAGCAACAACACCACGATGAAGGG
GGAACCCTCCTTCATCCCGGTCGCCAAGCAGACGGCCGAGTGGAAGGGCAATGCCTACGGGCGGACGTTGCACTTCGGCA
TCCGTGAGCACGCCATGGCCGCAATCCTCAACGGCATCGCGCTGCAGAGTCTGACACGTCCCTACGGCGGCACATTCCTC
GTCTTCAGCGACTACATGCGTCCGGCAGTCCGTCTGGCAGCGCTCATGCGGCTCCCGGCCACCTACGTCTGGACGCACGA
CTCCATCGGGTTGGGCGAGGACGGGCCCACCCACCAGCCCGTCGAGCACCTGGCCGCGCTACGGGCGATTCCTGGCCTCG
ACGTCGTACGGCCGGCCGATGCGAATGAGACCACTGTCTGCTGGCGCACCATCATCGAGCATCAGGACAGGCCCGCCGGT
CTCGTGCTCACCCGGCAGCCGCTGCCCGTCCTGGAACGGGGCACCGACACGCATGCCCCGGCCGAGGAAGCGGCCCGCGG
CGCGTACGTCCTCGTGGACCGTGCCGACGGGCAGCCCGACGTCGTCCTCGTCGCGACCGGCTCGGAAGTACACATCGCCC
TGCAGGCGCGTGAACTGCTGGCCGCCGAAGGGTACGAGGCACGCGTGGTGTCCATGCCGTGCCGGGAATGGTTCCACGCT
CAGCCCGTTGCCTATCAGAACGCGGTACTGCCGCCCGCCGTGCGCGCCCGCGTGAGCGTCGAGGCGGCCGTCGGTCAGGG
CTGGCGCGACATCGTGGGCGACGCGGGCCGCATCGTCAGCCTCGAGCACTTCGGCGCCTCCGCCGACTACAAGCGCCTCT
ACCAGGAATTCGACATCACGCCTCAAGCGGTGGTTGCTGCAGCCCTCAGCAGCATCCGTGCGGCCTCCGGCACGGTGAAC
CCCGGTGGAGAGCGGCACGCCTAG

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(389-569)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(33-373)

Transketolase, C-terminal domain (Transketolase_C)

(593-704)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

43.586

94.36

0.411

Multiple sequence alignment