Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG09_RS07075 Genome accession   NZ_CP094150
Coordinates   1489638..1490951 (-) Length   437 a.a.
NCBI ID   WP_245026972.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe022     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1484638..1495951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG09_RS07045 (MPG09_07045) nadC 1485101..1485922 (-) 822 WP_180506186.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG09_RS07050 (MPG09_07050) nadA 1485922..1486932 (-) 1011 WP_245026964.1 quinolinate synthase NadA -
  MPG09_RS07055 (MPG09_07055) - 1486922..1487725 (-) 804 WP_245026966.1 phosphatidylserine decarboxylase -
  MPG09_RS07060 (MPG09_07060) - 1487722..1488225 (-) 504 WP_140496887.1 helix-turn-helix domain-containing protein -
  MPG09_RS07065 (MPG09_07065) - 1488238..1488732 (-) 495 WP_245026968.1 hypothetical protein -
  MPG09_RS07070 (MPG09_07070) mqnP 1488725..1489609 (-) 885 WP_245026970.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG09_RS07075 (MPG09_07075) comEC/comE3 1489638..1490951 (-) 1314 WP_245026972.1 ComEC/Rec2 family competence protein Machinery gene
  MPG09_RS07080 (MPG09_07080) - 1490948..1492408 (-) 1461 WP_245026974.1 replicative DNA helicase -
  MPG09_RS07085 (MPG09_07085) - 1492419..1493813 (-) 1395 WP_245026976.1 NAD(P)H-hydrate dehydratase -
  MPG09_RS07090 (MPG09_07090) crdS 1493816..1495018 (-) 1203 WP_154422460.1 copper-sensing histidine kinase CrdS -
  MPG09_RS07095 (MPG09_07095) crdR 1494984..1495625 (-) 642 WP_245026978.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49966.87 Da        Isoelectric Point: 9.9068

>NTDB_id=667672 MPG09_RS07075 WP_245026972.1 1489638..1490951(-) (comEC/comE3) [Helicobacter pylori strain Hpfe022]
MKDKTFQGAFELLATPKEYLLCGVILSLLLVLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667672 MPG09_RS07075 WP_245026972.1 1489638..1490951(-) (comEC/comE3) [Helicobacter pylori strain Hpfe022]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGTACTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCTACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAATGCGTTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTATGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGT
GCGCTAGTGTTTTTGAACATGCTCATCATTGCACATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment