Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHA79_RS32155 Genome accession   NZ_CP108853
Coordinates   7023705..7024718 (+) Length   337 a.a.
NCBI ID   WP_266981153.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00841     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 7018705..7029718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA79_RS32135 (OHA79_32130) - 7018997..7020673 (+) 1677 WP_266981160.1 ABC transporter substrate-binding protein -
  OHA79_RS32140 (OHA79_32135) - 7020694..7021749 (+) 1056 WP_266981158.1 ABC transporter ATP-binding protein -
  OHA79_RS32145 (OHA79_32140) - 7021746..7022726 (+) 981 WP_266981156.1 ABC transporter permease -
  OHA79_RS32150 (OHA79_32145) - 7022731..7023708 (+) 978 WP_266981155.1 ABC transporter permease -
  OHA79_RS32155 (OHA79_32150) amiE 7023705..7024718 (+) 1014 WP_266981153.1 ABC transporter ATP-binding protein Regulator
  OHA79_RS32160 (OHA79_32155) - 7024746..7026164 (+) 1419 WP_266981152.1 GH1 family beta-glucosidase -
  OHA79_RS32165 (OHA79_32160) - 7026213..7029302 (+) 3090 WP_266981151.1 glycoside hydrolase family 3 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36524.91 Da        Isoelectric Point: 6.4437

>NTDB_id=667648 OHA79_RS32155 WP_266981153.1 7023705..7024718(+) (amiE) [Streptomyces sp. NBC_00841]
MSEPVLTISGLNVDYGTGDAAVHALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGEVHYHQRDGEAL
DLLTLTAPELRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLKAHRPEMKRAERTARAVELLSLVGISADRLSAYPHQL
SGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILRQLVKLREELGFSVVFITHDISLLIEFSDRIAIMYGGRIVE
EAGASDIYRDPCHPYSDGLLHSFPALHGPRRELTGIPGSPPHLSAMPDGCAFHPRCGKALDPCATQVPVLARPDGDGSRT
VACWLHQPTPATAAPRS

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=667648 OHA79_RS32155 WP_266981153.1 7023705..7024718(+) (amiE) [Streptomyces sp. NBC_00841]
ATGAGCGAGCCCGTCCTCACCATCAGCGGCCTGAACGTGGACTACGGGACCGGGGACGCCGCCGTGCACGCGCTGCGCGA
CATCGACCTCACCCTGCACCGCGGCGAAGTCCTCGGCCTGGCGGGCGAGTCGGGCTCCGGCAAGTCCACCCTGGCGTACG
CCGTCACCCGGCTTCTGTCCCCGCCCGGAGTGATCACCGGCGGCGAGGTCCACTACCACCAGCGCGACGGCGAAGCGCTC
GACCTGCTGACCCTGACCGCCCCCGAGCTGCGTGCCTTCCGCTGGCAGGAGCTGTCGATCGTCTTCCAGGGCGCGATGAA
CTCCCTGAACCCGGTGCACACGGTCCACAGCCAGCTCACCGACGTGCTCAAGGCGCACCGCCCGGAGATGAAGCGGGCCG
AACGCACCGCACGCGCGGTGGAGCTCCTGTCCCTGGTCGGCATCTCGGCGGACCGGCTCTCCGCCTACCCGCACCAGCTC
TCCGGCGGCATGCGGCAACGCGTGATGATCGCGATGGCGCTCGCGCTGGAGCCCGAGATCGTCATCATGGACGAGCCCAC
GACGGCCCTGGACGTCGTCATGCAGCGCCAGATCCTGCGCCAACTGGTCAAGCTCCGCGAGGAGCTGGGCTTCTCCGTCG
TCTTCATCACCCACGACATCTCGCTGCTGATCGAGTTCTCGGACCGGATCGCGATCATGTACGGCGGCCGGATCGTCGAG
GAGGCCGGTGCCTCCGACATCTACCGCGACCCCTGCCACCCCTACAGCGACGGACTGCTGCACTCCTTCCCGGCGCTGCA
CGGCCCCCGCCGCGAACTCACCGGCATCCCCGGCTCGCCCCCGCATCTGTCCGCGATGCCGGACGGCTGCGCCTTCCACC
CCCGCTGCGGCAAGGCGCTCGACCCGTGCGCCACCCAGGTGCCGGTCCTGGCCCGACCGGACGGGGACGGCTCCCGCACG
GTGGCCTGCTGGCTCCATCAGCCCACGCCGGCCACCGCCGCCCCCCGCTCGTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-303)

ABC transporter (ABC_tran)

(25-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

38.507

99.407

0.383
  amiE Streptococcus thermophilus LMD-9

38.507

99.407

0.383
  amiE Streptococcus salivarius strain HSISS4

38.209

99.407

0.38

Multiple sequence alignment