Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF84_RS05595 Genome accession   NZ_CP094149
Coordinates   1171499..1171903 (-) Length   134 a.a.
NCBI ID   WP_245085234.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1166499..1176903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF84_RS05560 (MPF84_05560) - 1166555..1167674 (-) 1120 Protein_1088 hypothetical protein -
  MPF84_RS05565 (MPF84_05565) - 1167664..1168449 (-) 786 WP_245085225.1 hypothetical protein -
  MPF84_RS05570 (MPF84_05570) - 1168449..1168835 (-) 387 WP_140607868.1 DUF1294 domain-containing protein -
  MPF84_RS05575 (MPF84_05575) - 1169184..1169573 (-) 390 WP_245085228.1 hypothetical protein -
  MPF84_RS05580 (MPF84_05580) - 1169874..1170434 (-) 561 WP_180615001.1 hypothetical protein -
  MPF84_RS05585 (MPF84_05585) - 1170418..1170756 (-) 339 WP_000699916.1 hypothetical protein -
  MPF84_RS05590 (MPF84_05590) - 1170883..1171362 (-) 480 WP_245085231.1 tetratricopeptide repeat protein -
  MPF84_RS05595 (MPF84_05595) dprB 1171499..1171903 (-) 405 WP_245085234.1 Holliday junction resolvase RuvX Machinery gene
  MPF84_RS05600 (MPF84_05600) dprA 1171900..1172700 (-) 801 WP_245085237.1 DNA-processing protein DprA Machinery gene
  MPF84_RS05605 (MPF84_05605) minE 1172712..1172945 (-) 234 WP_154509044.1 cell division topological specificity factor MinE -
  MPF84_RS05610 (MPF84_05610) minD 1172942..1173748 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPF84_RS05615 (MPF84_05615) ilvC 1173773..1174765 (-) 993 WP_245085240.1 ketol-acid reductoisomerase -
  MPF84_RS05625 (MPF84_05625) - 1175014..1175796 (+) 783 WP_245085243.1 NAD+ synthase -
  MPF84_RS05630 (MPF84_05630) - 1175793..1176731 (+) 939 WP_245085246.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15254.74 Da        Isoelectric Point: 8.7230

>NTDB_id=667644 MPF84_RS05595 WP_245085234.1 1171499..1171903(-) (dprB) [Helicobacter pylori strain Hpfe023]
MILACDVGLKHIGIAMLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLRDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667644 MPF84_RS05595 WP_245085234.1 1171499..1171903(-) (dprB) [Helicobacter pylori strain Hpfe023]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCACATTGGGATCGCTATGCTTTTAAACGGTGTTATCTTGCCTTTAGAAGC
GATCTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAACATTTCATCAAGCTTTTGGACTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAGAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.233

99.254

0.925

Multiple sequence alignment