Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPF84_RS00010 Genome accession   NZ_CP094149
Coordinates   1589..2878 (+) Length   429 a.a.
NCBI ID   WP_245085757.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe023     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..7878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF84_RS00005 (MPF84_00005) dnaA 1..1368 (+) 1368 WP_154501564.1 chromosomal replication initiator protein DnaA -
  MPF84_RS00010 (MPF84_00010) comH 1589..2878 (+) 1290 WP_245085757.1 competence protein Machinery gene
  MPF84_RS00020 (MPF84_00020) - 3056..3808 (+) 753 WP_245085759.1 exodeoxyribonuclease III -
  MPF84_RS00025 (MPF84_00025) - 3805..4440 (-) 636 WP_120932086.1 outer membrane protein -
  MPF84_RS00030 (MPF84_00030) - 4444..4797 (-) 354 WP_245085761.1 hypothetical protein -
  MPF84_RS00035 (MPF84_00035) recG 4879..6744 (+) 1866 WP_245085763.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 49186.38 Da        Isoelectric Point: 6.2975

>NTDB_id=667629 MPF84_RS00010 WP_245085757.1 1589..2878(+) (comH) [Helicobacter pylori strain Hpfe023]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHPHQMPSLNAPIQKPQNKPTSSQQSLQNFPYSESKLGSKNPKNSLLQPL
ATPSKISSANEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNADTNEHHESNENRDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKNGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPK
QDDQIEPTFYETSELAYSSTRKSEITHNELNLNDKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRLKEGVCMVLEIEE
QPRAKSTPLSIENSRVICVKKGNYLFNEV

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=667629 MPF84_RS00010 WP_245085757.1 1589..2878(+) (comH) [Helicobacter pylori strain Hpfe023]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGGCAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACACTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCCGCACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTTCCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCTACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTTTTCATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATACTA
ATGAACACCATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATATTAAAGAATTTGCG
TGCGGGAAATGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAACGGCACGACCAGGCAATGCTATCTCATAG
AAGAGCCTTTAAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAA
CAAGACGATCAAATAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCA
TAATGAATTGAATTTGAATGATAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAG
AAAGCAGTGAATACAAAGAATGGGTTAAAAACCATGTGCGTTTAAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAG
CAACCACGAGCCAAAAGCACGCCTTTGAGTATTGAAAATTCTCGTGTTATTTGTGTCAAAAAGGGGAATTATTTATTCAA
CGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

82.255

100

0.918

Multiple sequence alignment