Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG61_RS07210 Genome accession   NZ_CP094148
Coordinates   1501920..1502201 (-) Length   93 a.a.
NCBI ID   WP_245020393.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe024     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1496920..1507201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG61_RS07190 (MPG61_07190) - 1497633..1498973 (-) 1341 WP_245020391.1 hypothetical protein -
  MPG61_RS07200 (MPG61_07200) comB4 1499292..1501655 (-) 2364 WP_245020392.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG61_RS07205 (MPG61_07205) comB3 1501657..1501920 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG61_RS07210 (MPG61_07210) comB2 1501920..1502201 (-) 282 WP_245020393.1 TrbC/VirB2 family protein Machinery gene
  MPG61_RS07215 (MPG61_07215) - 1502346..1503173 (-) 828 WP_001154890.1 DUF5718 family protein -
  MPG61_RS07220 (MPG61_07220) - 1503263..1504315 (-) 1053 WP_245020394.1 MnmA/TRMU family protein -
  MPG61_RS07225 (MPG61_07225) dnaG 1504312..1505991 (-) 1680 WP_245020395.1 DNA primase -
  MPG61_RS07230 (MPG61_07230) groES 1506266..1506622 (+) 357 WP_000671947.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10593.86 Da        Isoelectric Point: 9.0631

>NTDB_id=667628 MPG61_RS07210 WP_245020393.1 1501920..1502201(-) (comB2) [Helicobacter pylori strain Hpfe024]
MSAYFLRIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667628 MPG61_RS07210 WP_245020393.1 1501920..1502201(-) (comB2) [Helicobacter pylori strain Hpfe024]
ATGTCCGCTTATTTTTTAAGAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAATGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCTCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

96.774

100

0.968

Multiple sequence alignment