Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA79_RS22585 Genome accession   NZ_CP108853
Coordinates   4977855..4978454 (-) Length   199 a.a.
NCBI ID   WP_266984177.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00841     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4972855..4983454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA79_RS22565 (OHA79_22550) - 4973249..4973824 (-) 576 WP_266984182.1 SigE family RNA polymerase sigma factor -
  OHA79_RS22570 (OHA79_22555) - 4974183..4975247 (-) 1065 WP_266984181.1 aspartate-semialdehyde dehydrogenase -
  OHA79_RS22575 (OHA79_22560) - 4975244..4976515 (-) 1272 WP_266984180.1 aspartate kinase -
  OHA79_RS22580 (OHA79_22565) - 4977061..4977720 (-) 660 WP_266984178.1 DUF5063 domain-containing protein -
  OHA79_RS22585 (OHA79_22570) recR 4977855..4978454 (-) 600 WP_266984177.1 recombination mediator RecR Machinery gene
  OHA79_RS22590 (OHA79_22575) - 4978537..4978872 (-) 336 WP_266984175.1 YbaB/EbfC family nucleoid-associated protein -
  OHA79_RS22595 (OHA79_22580) - 4979233..4980048 (+) 816 WP_266984173.1 SLATT domain-containing protein -
  OHA79_RS22600 (OHA79_22585) - 4980142..4980792 (-) 651 WP_326793352.1 hypothetical protein -
  OHA79_RS22605 (OHA79_22590) - 4980917..4981636 (-) 720 WP_326792510.1 GntR family transcriptional regulator -
  OHA79_RS22610 (OHA79_22595) - 4981751..4983133 (-) 1383 WP_326792511.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21860.13 Da        Isoelectric Point: 4.9976

>NTDB_id=667624 OHA79_RS22585 WP_266984177.1 4977855..4978454(-) (recR) [Streptomyces sp. NBC_00841]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQEEQCGICRDARRDQTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=667624 OHA79_RS22585 WP_266984177.1 4977855..4978454(-) (recR) [Streptomyces sp. NBC_00841]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCTTTCCACATCCTGCAGGCCGAGCCCACCGACGTGCGCCGTCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCTCGGTGTGCGGCAATGTCGCGCAGGAGGAGCAGTGCGGGATCTGCCGCGACGCACGCCGCGACCAGACGGTG
ATCTGTGTGGTCGAGGAACCGAAGGACGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGCTACCACGTGCTCGG
CGGGGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGCGAGCTGTTGGCGAGGCTCGCTGACGGCT
CGATCACGGAGCTGATCCTGGCCACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGATCAAG
CCCATGGGGCTGCGGGTGACGCGGCTGGCCAGCGGGCTGCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGGAGGCGCTTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462

Multiple sequence alignment