Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG61_RS07060 Genome accession   NZ_CP094148
Coordinates   1470224..1471537 (-) Length   437 a.a.
NCBI ID   WP_245020380.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe024     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1465224..1476537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG61_RS07030 (MPG61_07030) nadC 1465688..1466509 (-) 822 WP_245020375.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG61_RS07035 (MPG61_07035) nadA 1466509..1467519 (-) 1011 WP_001141983.1 quinolinate synthase NadA -
  MPG61_RS07040 (MPG61_07040) - 1467506..1468312 (-) 807 WP_245020376.1 phosphatidylserine decarboxylase -
  MPG61_RS07045 (MPG61_07045) - 1468309..1468812 (-) 504 WP_245020377.1 helix-turn-helix domain-containing protein -
  MPG61_RS07050 (MPG61_07050) - 1468825..1469319 (-) 495 WP_245020378.1 hypothetical protein -
  MPG61_RS07055 (MPG61_07055) mqnP 1469312..1470196 (-) 885 WP_245020379.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG61_RS07060 (MPG61_07060) comEC/comE3 1470224..1471537 (-) 1314 WP_245020380.1 ComEC/Rec2 family competence protein Machinery gene
  MPG61_RS07065 (MPG61_07065) - 1471534..1472994 (-) 1461 WP_245020381.1 replicative DNA helicase -
  MPG61_RS07070 (MPG61_07070) - 1473005..1474399 (-) 1395 WP_245020382.1 NAD(P)H-hydrate dehydratase -
  MPG61_RS07075 (MPG61_07075) crdS 1474402..1475604 (-) 1203 WP_245020819.1 copper-sensing histidine kinase CrdS -
  MPG61_RS07080 (MPG61_07080) crdR 1475570..1476211 (-) 642 WP_245020383.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50015.87 Da        Isoelectric Point: 9.8806

>NTDB_id=667624 MPG61_RS07060 WP_245020380.1 1470224..1471537(-) (comEC/comE3) [Helicobacter pylori strain Hpfe024]
MKDKTFQGAFELLTTSKECLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGRIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHAQAFFKTSSFLARSFQVISLS
VLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISISSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667624 MPG61_RS07060 WP_245020380.1 1470224..1471537(-) (comEC/comE3) [Helicobacter pylori strain Hpfe024]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCTCCAAAGAATGCTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAGGATCAAATCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGACAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTTAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACGCTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GTGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATCATA
TTCTAAGCATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTGAGTGCACGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941

Multiple sequence alignment