Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG61_RS05570 Genome accession   NZ_CP094148
Coordinates   1160047..1160451 (-) Length   134 a.a.
NCBI ID   WP_245020221.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1155047..1165451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG61_RS05530 (MPG61_05530) - 1155223..1156302 (-) 1080 WP_245020216.1 hypothetical protein -
  MPG61_RS05535 (MPG61_05535) - 1156292..1157076 (-) 785 Protein_1078 hypothetical protein -
  MPG61_RS05540 (MPG61_05540) - 1157076..1157462 (-) 387 WP_024116661.1 DUF1294 domain-containing protein -
  MPG61_RS05545 (MPG61_05545) - 1157792..1158181 (-) 390 WP_245020217.1 lysozyme -
  MPG61_RS05550 (MPG61_05550) - 1158135..1158473 (-) 339 WP_245020218.1 lysozyme -
  MPG61_RS05555 (MPG61_05555) - 1158484..1159044 (-) 561 WP_245020219.1 hypothetical protein -
  MPG61_RS05560 (MPG61_05560) - 1159028..1159366 (-) 339 WP_000699916.1 hypothetical protein -
  MPG61_RS05565 (MPG61_05565) - 1159557..1159913 (-) 357 WP_245020220.1 tetratricopeptide repeat protein -
  MPG61_RS05570 (MPG61_05570) dprB 1160047..1160451 (-) 405 WP_245020221.1 Holliday junction resolvase RuvX Machinery gene
  MPG61_RS05575 (MPG61_05575) dprA 1160448..1161248 (-) 801 WP_245020222.1 DNA-processing protein DprA Machinery gene
  MPG61_RS05580 (MPG61_05580) minE 1161260..1161493 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG61_RS05585 (MPG61_05585) minD 1161490..1162296 (-) 807 WP_245020223.1 septum site-determining protein MinD -
  MPG61_RS05590 (MPG61_05590) ilvC 1162321..1163313 (-) 993 WP_245020224.1 ketol-acid reductoisomerase -
  MPG61_RS05600 (MPG61_05600) - 1163562..1164344 (+) 783 WP_245020225.1 NAD+ synthase -
  MPG61_RS05605 (MPG61_05605) - 1164341..1165279 (+) 939 WP_245020226.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15320.81 Da        Isoelectric Point: 9.4519

>NTDB_id=667621 MPG61_RS05570 WP_245020221.1 1160047..1160451(-) (dprB) [Helicobacter pylori strain Hpfe024]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNAHIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667621 MPG61_RS05570 WP_245020221.1 1160047..1160451(-) (dprB) [Helicobacter pylori strain Hpfe024]
GTGATTTTGGCATGCGATGTAGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCACATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948

Multiple sequence alignment