Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG61_RS00805 Genome accession   NZ_CP094148
Coordinates   175879..176163 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe024     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 170879..181163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG61_RS00780 (MPG61_00780) - 171483..172652 (-) 1170 WP_245020512.1 VirB8/TrbF family protein -
  MPG61_RS00785 (MPG61_00785) - 172645..172779 (-) 135 WP_000738749.1 hypothetical protein -
  MPG61_RS00790 (MPG61_00790) - 172776..175358 (-) 2583 WP_245020513.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG61_RS00795 (MPG61_00795) - 175358..175594 (-) 237 WP_180424003.1 hypothetical protein -
  MPG61_RS00800 (MPG61_00800) comB3 175605..175868 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPG61_RS00805 (MPG61_00805) comB2 175879..176163 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG61_RS00810 (MPG61_00810) - 176160..176639 (-) 480 WP_000571125.1 hypothetical protein -
  MPG61_RS00815 (MPG61_00815) - 176743..177530 (-) 788 Protein_161 integrase -
  MPG61_RS00820 (MPG61_00820) - 177585..178601 (-) 1017 Protein_162 hypothetical protein -
  MPG61_RS00825 (MPG61_00825) - 178709..179122 (+) 414 WP_001022997.1 universal stress protein -
  MPG61_RS00830 (MPG61_00830) - 179142..179417 (+) 276 WP_000784960.1 ATP-dependent Clp protease adaptor ClpS -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=667611 MPG61_RS00805 WP_000736478.1 175879..176163(-) (comB2) [Helicobacter pylori strain Hpfe024]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=667611 MPG61_RS00805 WP_000736478.1 175879..176163(-) (comB2) [Helicobacter pylori strain Hpfe024]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment