Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG27_RS07065 Genome accession   NZ_CP094147
Coordinates   1482578..1482841 (-) Length   87 a.a.
NCBI ID   WP_000584962.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe027     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477578..1487841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG27_RS07050 (MPG27_07050) - 1478552..1479892 (-) 1341 WP_195833961.1 hypothetical protein -
  MPG27_RS07060 (MPG27_07060) comB4 1480213..1482576 (-) 2364 WP_245042252.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG27_RS07065 (MPG27_07065) comB3 1482578..1482841 (-) 264 WP_000584962.1 hypothetical protein Machinery gene
  MPG27_RS07070 (MPG27_07070) comB2 1482841..1483122 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG27_RS07075 (MPG27_07075) - 1483266..1484093 (-) 828 WP_245042254.1 DUF5718 family protein -
  MPG27_RS07080 (MPG27_07080) - 1484184..1485236 (-) 1053 WP_245042256.1 MnmA/TRMU family protein -
  MPG27_RS07085 (MPG27_07085) dnaG 1485233..1486912 (-) 1680 WP_245042258.1 DNA primase -
  MPG27_RS07090 (MPG27_07090) groES 1487199..1487555 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10076.17 Da        Isoelectric Point: 9.5507

>NTDB_id=667605 MPG27_RS07065 WP_000584962.1 1482578..1482841(-) (comB3) [Helicobacter pylori strain Hpfe027]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLVLFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667605 MPG27_RS07065 WP_000584962.1 1482578..1482841(-) (comB3) [Helicobacter pylori strain Hpfe027]
ATGATTATCTTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTCGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCGGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966

Multiple sequence alignment