Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OHA79_RS14485 Genome accession   NZ_CP108853
Coordinates   3152847..3155882 (-) Length   1011 a.a.
NCBI ID   WP_326792188.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00841     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3147847..3160882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA79_RS14470 (OHA79_14445) uvrC 3148598..3150628 (-) 2031 WP_326792187.1 excinuclease ABC subunit UvrC -
  OHA79_RS14475 (OHA79_14450) - 3151238..3152031 (+) 794 Protein_2879 hypothetical protein -
  OHA79_RS14480 (OHA79_14455) - 3151988..3152416 (-) 429 WP_266986912.1 Rieske (2Fe-2S) protein -
  OHA79_RS14485 (OHA79_14460) uvrA 3152847..3155882 (-) 3036 WP_326792188.1 excinuclease ABC subunit UvrA Machinery gene
  OHA79_RS14490 (OHA79_14465) - 3156059..3156748 (+) 690 WP_326792189.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OHA79_RS14495 (OHA79_14470) - 3156759..3157415 (+) 657 WP_266986906.1 MBL fold metallo-hydrolase -
  OHA79_RS14500 (OHA79_14475) - 3157463..3158455 (-) 993 WP_326792190.1 TerC family protein -
  OHA79_RS14505 (OHA79_14480) - 3158701..3160689 (-) 1989 WP_326792191.1 TerD family protein -

Sequence

Protein


Download         Length: 1011 a.a.        Molecular weight: 111015.37 Da        Isoelectric Point: 7.4784

>NTDB_id=667604 OHA79_RS14485 WP_326792188.1 3152847..3155882(-) (uvrA) [Streptomyces sp. NBC_00841]
MTDRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECSRPISRQSPQAIVDKVLGLPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGETIHLSEPPTLKKQEKHTIEVVIDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEEKSLDEGAIHPWSHGHTK
EYFGRQIDALAAALGFRTDIPWAGLPQRAKKALLFGHKIQTEVRYRNRYGRERAYTTPAFEGAVQFVKRRHSDAESDSSR
ERFEGYMREVPCPTCEGTRLKPIVLAVTVMEKSIAQVAAMSISECAEFLGRMKLNARDKKIAERVLKEVNERLKFLVDVG
LDYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVA
DWVVDIGPGAGEHGGKVVHSGSLKELLGNDESITGQYLVGKKAIAMPDIRRPVDPTRRLTVHGARENNLQDIDVSFPLGV
LTAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRKLF
AETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEE
GLEFFEAVPTIARHLRTLHEVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLIKVL
SGLVDKGNSVIVIEHNLDVIKTADWVIDMGPEGGNGGGLVVAEGTPELVATVPASHTGKFLQGILDADRVSEAAVPAARK
PVRRTAAKKAVAAKSSPARRTATAKTDIDGSAAAKPAKTAAAKKTTRARKA

Nucleotide


Download         Length: 3036 bp        

>NTDB_id=667604 OHA79_RS14485 WP_326792188.1 3152847..3155882(-) (uvrA) [Streptomyces sp. NBC_00841]
GTGACCGACCGTCTCATCGTCCGTGGCGCTCGCGAGCACAACCTCAAGAACGTCTCGCTCGACCTTCCCCGCGACTCCCT
CATCGTCTTCACCGGGCTTTCCGGGTCGGGCAAGTCGTCTCTCGCGTTCGACACGATCTTCGCCGAGGGCCAGCGCCGAT
ACGTGGAGTCCCTCTCCTCGTACGCCCGGCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGATTTCATCGAGGGCCTG
TCGCCCGCCGTCTCCATCGATCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACGATCACCGAGGTGTACGA
CTACCTCCGGCTGCTCTTCGCCCGGATCGGCAAGCCGCACTGCCCCGAGTGCTCTCGCCCCATCTCCCGCCAGTCGCCGC
AGGCCATCGTCGACAAGGTGCTCGGCCTGCCCGAGGGCAGCCGCTTCCAGGTGCTGTCGCCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCGCCGATCTGCAGACCAAGGGCTACAGCAGGGCCCGGGTCGACGGCGAGACCATCCACCT
CTCCGAGCCGCCCACGCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCATCGACCGCCTCACGGTGAAGGACAGCG
CCAAGCGCCGGCTGACCGACTCGGTCGAGACCGCGCTCGGGCTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCGGAGGACGACCCCGAGCGTGAGCGGATGTATTCCGAGCACCTCTACTGCCCGTACGACGACCTCTCCTTCGAAGAGCT
GGAGCCGCGCTCCTTCTCCTTCAACTCCCCCTTCGGCGCCTGCCCCGACTGCACGGGCATCGGTACGCGGATGGAGGTCG
ACCCGGAGCTGATCGTCCCCGACGAGGAGAAGTCCCTCGACGAGGGCGCGATCCACCCCTGGTCGCACGGCCACACCAAG
GAGTACTTCGGGCGGCAGATCGACGCGCTCGCCGCAGCCCTCGGATTCCGTACGGACATCCCATGGGCCGGGCTGCCTCA
GCGGGCCAAGAAGGCCCTGCTCTTCGGCCACAAGATCCAGACCGAGGTCCGCTACCGCAACCGGTACGGGCGTGAGCGCG
CGTACACCACCCCGGCCTTCGAGGGCGCGGTGCAGTTCGTCAAGCGGCGGCACTCCGACGCCGAGAGCGACTCCAGCAGG
GAGCGCTTCGAGGGCTACATGCGTGAGGTGCCCTGCCCGACCTGTGAGGGCACCAGGCTGAAGCCGATCGTCCTCGCGGT
CACGGTGATGGAGAAGTCCATCGCCCAGGTCGCCGCGATGTCCATCAGCGAGTGCGCCGAATTCCTCGGCCGGATGAAGC
TGAACGCCCGCGACAAGAAGATCGCCGAGCGGGTGCTCAAGGAGGTCAACGAGCGGCTGAAGTTCCTCGTCGACGTCGGC
CTCGACTATCTCTCGCTGAACCGCGCGGCAGGCACTCTGTCCGGCGGCGAGGCGCAGCGCATCCGGCTCGCCACCCAGAT
CGGCTCCGGACTCGTCGGCGTGCTGTACGTGCTGGACGAGCCGTCCATCGGCCTGCACCAGCGCGACAACCACCGGCTGA
TCGAGACGCTGGTCCGGCTCCGTGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCC
GACTGGGTCGTCGACATCGGCCCCGGCGCCGGTGAGCACGGCGGCAAGGTGGTCCACTCCGGCTCGCTCAAGGAACTGCT
CGGCAACGACGAGTCGATCACCGGCCAGTATCTGGTCGGCAAGAAGGCCATCGCGATGCCCGACATCCGGCGCCCGGTCG
ACCCGACGCGCAGGCTCACGGTGCACGGAGCCCGGGAGAACAACCTCCAGGACATCGACGTCTCCTTCCCGCTCGGGGTG
CTCACGGCCGTCACCGGAGTCTCGGGGTCGGGGAAGTCGACACTGGTCAACGACATCCTCTACACCCACCTGGCGCGCGA
GCTGAACGGTGCCAAGTCGGTCCCCGGGCGGCACACCCGGGTCGACGGCGACGACCTGGTCGACAAGGTGGTACACGTCG
ACCAGTCGCCGATCGGCCGTACGCCCCGGTCCAACCCGGCGACGTACACCGGCGTCTTCGACCATGTCCGCAAGCTGTTC
GCCGAGACGATGGAGGCGAAGGTGCGCGGCTATCTGCCGGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAA
CTGCTCCGGCGACGGCACGATCAAGATCGAGATGAACTTCCTGCCGGACGTGTACGTCCCGTGCGAGGTCTGCCACGGGG
CGCGGTACAACCGGGAGACGCTGGAGGTCCACTACAAGGGCAAGTCGATCGCCGAGGTGCTGGACATGCCGATCGAGGAG
GGTCTGGAGTTCTTCGAGGCCGTCCCGACGATCGCCCGCCATCTCCGTACGCTCCACGAGGTGGGCCTCGGATACGTCAG
GCTCGGCCAGTCCGCGCCGACGCTCTCCGGCGGTGAGGCGCAGCGCGTGAAGCTCGCGAGTGAGCTGCAGAAGCGCTCCA
CCGGCCGCACGGTCTACGTCCTGGACGAGCCGACCACCGGACTGCACTTCGAGGACATCAGTAAACTCATCAAGGTGCTG
TCCGGACTGGTCGACAAGGGCAACTCGGTGATCGTCATCGAGCACAACCTCGATGTCATCAAGACCGCGGACTGGGTCAT
CGACATGGGTCCCGAGGGCGGCAACGGCGGTGGCCTGGTGGTCGCCGAGGGTACGCCGGAGCTGGTCGCGACGGTCCCGG
CGAGCCACACGGGCAAGTTCCTCCAGGGCATCCTGGACGCGGACCGGGTGAGCGAGGCGGCGGTGCCCGCAGCGCGGAAG
CCCGTGCGGAGGACGGCCGCGAAGAAGGCCGTGGCCGCGAAGTCGTCCCCTGCGCGGAGGACGGCGACGGCCAAGACGGA
TATCGACGGAAGCGCGGCGGCCAAGCCGGCCAAGACGGCTGCGGCGAAGAAGACGACCCGCGCACGCAAGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(629-865)

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

55.954

93.867

0.525
  uvrA Streptococcus pneumoniae TIGR4

55.954

93.867

0.525
  uvrA Streptococcus pneumoniae D39

55.954

93.867

0.525

Multiple sequence alignment