Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG27_RS06940 Genome accession   NZ_CP094147
Coordinates   1454918..1456231 (-) Length   437 a.a.
NCBI ID   WP_245042218.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe027     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1449918..1461231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG27_RS06910 (MPG27_06910) nadC 1450381..1451202 (-) 822 WP_245042211.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG27_RS06915 (MPG27_06915) nadA 1451202..1452212 (-) 1011 WP_245042213.1 quinolinate synthase NadA -
  MPG27_RS06920 (MPG27_06920) - 1452202..1453005 (-) 804 WP_245042215.1 phosphatidylserine decarboxylase -
  MPG27_RS06925 (MPG27_06925) - 1453002..1453505 (-) 504 WP_000953083.1 hypothetical protein -
  MPG27_RS06930 (MPG27_06930) - 1453518..1454012 (-) 495 WP_014537179.1 hypothetical protein -
  MPG27_RS06935 (MPG27_06935) mqnP 1454005..1454889 (-) 885 WP_245042216.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG27_RS06940 (MPG27_06940) comEC/comE3 1454918..1456231 (-) 1314 WP_245042218.1 ComEC/Rec2 family competence protein Machinery gene
  MPG27_RS06945 (MPG27_06945) - 1456228..1457688 (-) 1461 WP_245042220.1 replicative DNA helicase -
  MPG27_RS06950 (MPG27_06950) - 1457699..1459093 (-) 1395 WP_245042222.1 NAD(P)H-hydrate dehydratase -
  MPG27_RS06955 (MPG27_06955) crdS 1459096..1460298 (-) 1203 WP_245043371.1 copper-sensing histidine kinase CrdS -
  MPG27_RS06960 (MPG27_06960) crdR 1460264..1460905 (-) 642 WP_180518480.1 copper response regulator transcription factor CrdR -
  MPG27_RS06965 (MPG27_06965) - 1460993..1461217 (-) 225 Protein_1365 type II restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50202.35 Da        Isoelectric Point: 9.8315

>NTDB_id=667602 MPG27_RS06940 WP_245042218.1 1454918..1456231(-) (comEC/comE3) [Helicobacter pylori strain Hpfe027]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
VYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKLCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASMYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDSILNMPLMIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667602 MPG27_RS06940 WP_245042218.1 1454918..1456231(-) (comEC/comE3) [Helicobacter pylori strain Hpfe027]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACGACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
GTTTACACCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATTATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGTATGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTCTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGTTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCACCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGCTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment