Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG27_RS05470 Genome accession   NZ_CP094147
Coordinates   1149205..1149609 (-) Length   134 a.a.
NCBI ID   WP_245041806.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1144205..1154609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG27_RS05425 (MPG27_05425) - 1144360..1145442 (-) 1083 WP_245041788.1 hypothetical protein -
  MPG27_RS05430 (MPG27_05430) - 1145432..1146217 (-) 786 WP_245041790.1 hypothetical protein -
  MPG27_RS05435 (MPG27_05435) - 1146217..1146603 (-) 387 WP_245041792.1 DUF1294 domain-containing protein -
  MPG27_RS05440 (MPG27_05440) - 1146940..1147101 (-) 162 WP_245041794.1 lysozyme -
  MPG27_RS05445 (MPG27_05445) - 1147284..1147502 (-) 219 WP_245041796.1 lysozyme -
  MPG27_RS05450 (MPG27_05450) - 1147641..1148201 (-) 561 WP_245041798.1 hypothetical protein -
  MPG27_RS05455 (MPG27_05455) - 1148185..1148523 (-) 339 WP_245041800.1 hypothetical protein -
  MPG27_RS05460 (MPG27_05460) - 1148712..1148915 (-) 204 WP_245041802.1 sel1 repeat family protein -
  MPG27_RS05465 (MPG27_05465) - 1148942..1149073 (-) 132 WP_245041804.1 tetratricopeptide repeat protein -
  MPG27_RS05470 (MPG27_05470) dprB 1149205..1149609 (-) 405 WP_245041806.1 Holliday junction resolvase RuvX Machinery gene
  MPG27_RS05475 (MPG27_05475) dprA 1149606..1150406 (-) 801 WP_140534698.1 DNA-processing protein DprA Machinery gene
  MPG27_RS05480 (MPG27_05480) minE 1150418..1150651 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG27_RS05485 (MPG27_05485) minD 1150648..1151454 (-) 807 WP_154411592.1 septum site-determining protein MinD -
  MPG27_RS05490 (MPG27_05490) ilvC 1151473..1152465 (-) 993 WP_245041816.1 ketol-acid reductoisomerase -
  MPG27_RS05500 (MPG27_05500) - 1152713..1153495 (+) 783 WP_231200596.1 NAD+ synthase -
  MPG27_RS05505 (MPG27_05505) - 1153492..1154430 (+) 939 WP_245041818.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15252.66 Da        Isoelectric Point: 8.2762

>NTDB_id=667598 MPG27_RS05470 WP_245041806.1 1149205..1149609(-) (dprB) [Helicobacter pylori strain Hpfe027]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGNPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667598 MPG27_RS05470 WP_245041806.1 1149205..1149609(-) (dprB) [Helicobacter pylori strain Hpfe027]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATTGCCGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTGGTGG
TGGGTAATCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955

Multiple sequence alignment