Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG27_RS00010 Genome accession   NZ_CP094147
Coordinates   1590..3023 (+) Length   477 a.a.
NCBI ID   WP_245042400.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe027     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG27_RS00005 (MPG27_00005) dnaA 1..1368 (+) 1368 WP_245042391.1 chromosomal replication initiator protein DnaA -
  MPG27_RS00010 (MPG27_00010) comH 1590..3023 (+) 1434 WP_245042400.1 competence protein Machinery gene
  MPG27_RS00020 (MPG27_00020) - 3201..3953 (+) 753 WP_075653384.1 exodeoxyribonuclease III -
  MPG27_RS00025 (MPG27_00025) - 3950..4585 (-) 636 WP_000668051.1 outer membrane protein -
  MPG27_RS00030 (MPG27_00030) - 4589..4942 (-) 354 WP_245042402.1 hypothetical protein -
  MPG27_RS00035 (MPG27_00035) recG 5024..6895 (+) 1872 WP_245042404.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54745.63 Da        Isoelectric Point: 7.2023

>NTDB_id=667587 MPG27_RS00010 WP_245042400.1 1590..3023(+) (comH) [Helicobacter pylori strain Hpfe027]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGTYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQNKPTSSQQSSQNFSYQESKLGSKNPKNSLLQPLAT
PNKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNADINEHNESNENRDNVEKQTIRDPNIKEFTCG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQIEPTFYETSELAYSSTRKSKITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVICVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=667587 MPG27_RS00010 WP_245042400.1 1590..3023(+) (comH) [Helicobacter pylori strain Hpfe027]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTCCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCACTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTTTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCTTTAAATGCACCCATACAAAAACCACAAAATAAACCCACTTCATCGCAACAAT
CTTCTCAAAACTTCTCTTATCAAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTAGCCACT
CCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTGTAGCACCACCCACTGAAAAAACACTCCCTAACAACACCCCTAACGCTGATATTAATGAAC
ACAATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAACGATTAGAGATCCTAATATTAAAGAATTTACGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACCTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGAGCCAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAATAG
AGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCAAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTAGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTACGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGTATTGAAAACTCTCGTGTTATTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.276

100

0.927

Multiple sequence alignment