Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG51_RS06945 Genome accession   NZ_CP094145
Coordinates   1462650..1462931 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe028     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1457650..1467931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG51_RS06925 (MPG51_06925) - 1458380..1459810 (-) 1431 WP_245034063.1 COG3014 family protein -
  MPG51_RS06935 (MPG51_06935) comB4 1460022..1462385 (-) 2364 WP_245034065.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG51_RS06940 (MPG51_06940) comB3 1462387..1462650 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG51_RS06945 (MPG51_06945) comB2 1462650..1462931 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG51_RS06950 (MPG51_06950) - 1463076..1463903 (-) 828 WP_245034067.1 DUF5718 family protein -
  MPG51_RS06955 (MPG51_06955) - 1463994..1465046 (-) 1053 WP_245034069.1 MnmA/TRMU family protein -
  MPG51_RS06960 (MPG51_06960) dnaG 1465043..1466722 (-) 1680 WP_245034071.1 DNA primase -
  MPG51_RS06965 (MPG51_06965) groES 1467007..1467363 (+) 357 WP_245034073.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667586 MPG51_RS06945 WP_001272686.1 1462650..1462931(-) (comB2) [Helicobacter pylori strain Hpfe028]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667586 MPG51_RS06945 WP_001272686.1 1462650..1462931(-) (comB2) [Helicobacter pylori strain Hpfe028]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCCAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment