Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG51_RS05355 Genome accession   NZ_CP094145
Coordinates   1125245..1125649 (-) Length   134 a.a.
NCBI ID   WP_245033716.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1120245..1130649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG51_RS05315 (MPG51_05315) - 1120420..1121493 (-) 1074 WP_245033706.1 hypothetical protein -
  MPG51_RS05320 (MPG51_05320) - 1121483..1122268 (-) 786 WP_245033708.1 hypothetical protein -
  MPG51_RS05325 (MPG51_05325) - 1122268..1122654 (-) 387 WP_245033710.1 DUF1294 domain-containing protein -
  MPG51_RS05330 (MPG51_05330) - 1122986..1123147 (-) 162 WP_014536434.1 lysozyme -
  MPG51_RS05335 (MPG51_05335) - 1123167..1123667 (-) 501 WP_245033712.1 glycoside hydrolase family protein -
  MPG51_RS05340 (MPG51_05340) - 1123678..1124238 (-) 561 WP_029567493.1 hypothetical protein -
  MPG51_RS05345 (MPG51_05345) - 1124222..1124560 (-) 339 WP_220821597.1 hypothetical protein -
  MPG51_RS05350 (MPG51_05350) - 1124747..1125076 (-) 330 WP_245033714.1 tetratricopeptide repeat protein -
  MPG51_RS05355 (MPG51_05355) dprB 1125245..1125649 (-) 405 WP_245033716.1 Holliday junction resolvase RuvX Machinery gene
  MPG51_RS05360 (MPG51_05360) dprA 1125646..1126446 (-) 801 WP_245033718.1 DNA-processing protein DprA Machinery gene
  MPG51_RS05365 (MPG51_05365) minE 1126458..1126691 (-) 234 WP_180594842.1 cell division topological specificity factor MinE -
  MPG51_RS05370 (MPG51_05370) minD 1126688..1127494 (-) 807 WP_075645901.1 septum site-determining protein MinD -
  MPG51_RS05375 (MPG51_05375) ilvC 1127518..1128510 (-) 993 WP_245033720.1 ketol-acid reductoisomerase -
  MPG51_RS05385 (MPG51_05385) - 1128758..1129540 (+) 783 WP_245033722.1 NAD+ synthase -
  MPG51_RS05390 (MPG51_05390) - 1129537..1130475 (+) 939 WP_245033724.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15102.61 Da        Isoelectric Point: 9.5504

>NTDB_id=667578 MPG51_RS05355 WP_245033716.1 1125245..1125649(-) (dprB) [Helicobacter pylori strain Hpfe028]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNAHIEHFIKLLDFKGG
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACKILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667578 MPG51_RS05355 WP_245033716.1 1125245..1125649(-) (dprB) [Helicobacter pylori strain Hpfe028]
GTGATTTTGGCATGCGATGTGGGGCTAAAACGCATTGGGATTGCTGTGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAATGCGCACATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGGA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
TGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAAGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
GCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933

Multiple sequence alignment