Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG75_RS05465 Genome accession   NZ_CP094144
Coordinates   1140916..1141320 (-) Length   134 a.a.
NCBI ID   WP_245038896.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe029     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1135916..1146320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG75_RS05425 (MPG75_05425) - 1136195..1137271 (-) 1077 Protein_1054 hypothetical protein -
  MPG75_RS05430 (MPG75_05430) - 1137261..1138045 (-) 785 Protein_1055 hypothetical protein -
  MPG75_RS05435 (MPG75_05435) - 1138051..1138441 (-) 391 Protein_1056 DUF1294 domain-containing protein -
  MPG75_RS05440 (MPG75_05440) - 1138769..1138930 (-) 162 WP_245038892.1 lysozyme -
  MPG75_RS05445 (MPG75_05445) - 1138950..1139450 (-) 501 WP_245038893.1 glycoside hydrolase family protein -
  MPG75_RS05450 (MPG75_05450) - 1139461..1140021 (-) 561 WP_245038894.1 hypothetical protein -
  MPG75_RS05455 (MPG75_05455) - 1140005..1140343 (-) 339 WP_000699911.1 hypothetical protein -
  MPG75_RS05460 (MPG75_05460) - 1140532..1140858 (-) 327 WP_245038895.1 tetratricopeptide repeat protein -
  MPG75_RS05465 (MPG75_05465) dprB 1140916..1141320 (-) 405 WP_245038896.1 Holliday junction resolvase RuvX Machinery gene
  MPG75_RS05470 (MPG75_05470) dprA 1141317..1142117 (-) 801 WP_245038897.1 DNA-processing protein DprA Machinery gene
  MPG75_RS05475 (MPG75_05475) minE 1142129..1142362 (-) 234 WP_180594842.1 cell division topological specificity factor MinE -
  MPG75_RS05480 (MPG75_05480) minD 1142359..1143165 (-) 807 WP_121296737.1 septum site-determining protein MinD -
  MPG75_RS05485 (MPG75_05485) ilvC 1143189..1144181 (-) 993 WP_245038898.1 ketol-acid reductoisomerase -
  MPG75_RS05495 (MPG75_05495) - 1144430..1145212 (+) 783 WP_245038899.1 NAD+ synthase -
  MPG75_RS05500 (MPG75_05500) - 1145209..1146147 (+) 939 WP_245038900.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15266.93 Da        Isoelectric Point: 10.1874

>NTDB_id=667557 MPG75_RS05465 WP_245038896.1 1140916..1141320(-) (dprB) [Helicobacter pylori strain Hpfe029]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGK
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667557 MPG75_RS05465 WP_245038896.1 1140916..1141320(-) (dprB) [Helicobacter pylori strain Hpfe029]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTGAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCAAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94

Multiple sequence alignment