Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG75_RS00735 Genome accession   NZ_CP094144
Coordinates   151863..152606 (+) Length   247 a.a.
NCBI ID   WP_245039418.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe029     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146863..157606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG75_RS00710 (MPG75_00710) panD 149015..149365 (+) 351 WP_231207590.1 aspartate 1-decarboxylase -
  MPG75_RS00715 (MPG75_00715) - 149376..149669 (+) 294 WP_245039417.1 YbaB/EbfC family nucleoid-associated protein -
  MPG75_RS00720 (MPG75_00720) - 149669..150664 (+) 996 WP_245040062.1 PDZ domain-containing protein -
  MPG75_RS00725 (MPG75_00725) comB6 150670..151725 (+) 1056 WP_245040063.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG75_RS00730 (MPG75_00730) comB7 151741..151866 (+) 126 WP_120902658.1 comB7 lipoprotein Machinery gene
  MPG75_RS00735 (MPG75_00735) comB8 151863..152606 (+) 744 WP_245039418.1 virB8 family protein Machinery gene
  MPG75_RS00740 (MPG75_00740) comB9 152606..153568 (+) 963 WP_245039419.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG75_RS00745 (MPG75_00745) comB10 153561..154697 (+) 1137 WP_245039421.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG75_RS00750 (MPG75_00750) - 154767..156179 (+) 1413 WP_245039423.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG75_RS00755 (MPG75_00755) gmd 156193..157338 (+) 1146 WP_031214491.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28698.94 Da        Isoelectric Point: 8.9546

>NTDB_id=667549 MPG75_RS00735 WP_245039418.1 151863..152606(+) (comB8) [Helicobacter pylori strain Hpfe029]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEV
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667549 MPG75_RS00735 WP_245039418.1 151863..152606(+) (comB8) [Helicobacter pylori strain Hpfe029]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGGCTGGAGAGAAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTAGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GTACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAGTC
GCGCCAACTAACAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment