Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OH821_RS19570 Genome accession   NZ_CP108850
Coordinates   4157415..4158827 (+) Length   470 a.a.
NCBI ID   WP_406420503.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00842     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4152415..4163827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH821_RS19550 (OH821_19510) - 4152579..4153406 (-) 828 WP_406420499.1 sugar phosphate isomerase/epimerase family protein -
  OH821_RS19555 (OH821_19515) - 4153532..4154479 (-) 948 WP_406420500.1 Ppx/GppA family phosphatase -
  OH821_RS19560 (OH821_19520) - 4154520..4155401 (+) 882 WP_406420501.1 hypothetical protein -
  OH821_RS19565 (OH821_19525) - 4155426..4157219 (-) 1794 WP_406420502.1 BACON domain-containing protein -
  OH821_RS19570 (OH821_19530) radA/sms 4157415..4158827 (+) 1413 WP_406420503.1 DNA repair protein RadA Machinery gene
  OH821_RS19575 (OH821_19535) disA 4158908..4160032 (+) 1125 WP_327245732.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OH821_RS19580 (OH821_19540) - 4160265..4161083 (-) 819 WP_406420504.1 hypothetical protein -
  OH821_RS19585 (OH821_19545) - 4161259..4161402 (+) 144 WP_406420505.1 hypothetical protein -
  OH821_RS19590 - 4161617..4161934 (+) 318 WP_406420506.1 phosphatase PAP2 family protein -
  OH821_RS19595 (OH821_19555) - 4162231..4163133 (+) 903 WP_406420507.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49623.66 Da        Isoelectric Point: 8.2598

>NTDB_id=667545 OH821_RS19570 WP_406420503.1 4157415..4158827(+) (radA/sms) [Streptomyces sp. NBC_00842]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVDE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVANMGEALRVLPRRSRTEAPREDNARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=667545 OH821_RS19570 WP_406420503.1 4157415..4158827(+) (radA/sms) [Streptomyces sp. NBC_00842]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTATCGCTGCACCGAATGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGCACGGTCGAGGAATTCGGCGGTGCCCCTGCCGTACGGACGACGGCGGCCG
GCCGCGTGAGTACGGCCGCTCTCCCCATCGGCCAGGTCGACAGCCGACAGGCCACCGCCCGGTCGACCGGTGTCGACGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCTGTGGTGCTGGTCGCGGGCGAGCCGGGCGTGGGTAAGTCGAC
GCTCCTGCTGGACGTGGCAGCCAAGGCAGCCAGTGACGAGCACCGCACCCTCTATGTCACCGCGGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGTGCCGACCGGATCCGCGCGATCAACGACCACCTCTACCTCGCGGCCGAGACCGACCTCTCCGCGGTC
CTCGGCCATCTGGACGCGGTCAAGCCGTCCCTGCTCATCCTCGACTCCGTACAGACCGTCGCCTCGCCCGAGATCGACGG
TGCGCCCGGCGGTATGGCGCAGGTCCGGGAGGTCGCCGGAGCGCTCATCCGCGCCTCCAAGGACCGCGGCATGTCCACGC
TGCTGGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGACCGCGGCTGCTGGAGCACCTCGTCGACGTGGTGCTGTCC
TTCGAGGGCGACCGTCACGCGCGCCTCCGGCTGGTCCGCGGCGTGAAGAACCGGTACGGCGCGACGGACGAGGTCGGCTG
TTTCGAACTGCACGACGAGGGCATCACCGGCCTCGCCGACCCGTCCGGGCTCTTCCTCACCCGGCGCGACGAACCCGTAC
CCGGCACCTGTCTCACAGTCACCCTGGAGGGACGTCGCCCGCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGATTCGCAG
ATCCCGTCGCCCCGGCGCACCACCTCCGGGCTCGAGACGTCCCGGGTCTCGATGATGCTGGCCGTTCTGGAGCAGCGCGG
CCGGATCAGCTCGCTCGGAAAGCGGGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCCGCCGCCGACC
TCGCCGTCGCACTGGCGCTGGCCAGTGCGGCAAGCGACACACCACTGCCCAAGAACCTGGTGGCGATCGGCGAAGTGGGC
CTCGCGGGCGAGGTCAGACGCGTGACCGGGGTGCAGCGCAGACTGGCCGAGGCACACCGGCTGGGCTTCACCCACGCACT
GGTCCCGACCGACCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGCGAGGCGCTGAGAGTAC
TCCCGCGCCGGTCTCGTACGGAGGCCCCACGGGAGGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(83-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.383

0.421
  radA Streptococcus pneumoniae Rx1

43.046

96.383

0.415
  radA Streptococcus pneumoniae D39

43.046

96.383

0.415
  radA Streptococcus pneumoniae R6

43.046

96.383

0.415
  radA Streptococcus pneumoniae TIGR4

43.046

96.383

0.415
  radA Streptococcus mitis SK321

44.289

91.277

0.404
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404

Multiple sequence alignment