Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG75_RS00010 Genome accession   NZ_CP094144
Coordinates   1591..3024 (+) Length   477 a.a.
NCBI ID   WP_245039336.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe029     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG75_RS00005 (MPG75_00005) dnaA 1..1368 (+) 1368 WP_024774105.1 chromosomal replication initiator protein DnaA -
  MPG75_RS00010 (MPG75_00010) comH 1591..3024 (+) 1434 WP_245039336.1 competence protein Machinery gene
  MPG75_RS00020 (MPG75_00020) - 3202..3954 (+) 753 WP_245039337.1 exodeoxyribonuclease III -
  MPG75_RS00025 (MPG75_00025) - 3951..4586 (-) 636 WP_000668030.1 outer membrane protein -
  MPG75_RS00030 (MPG75_00030) - 4590..4943 (-) 354 WP_000836998.1 hypothetical protein -
  MPG75_RS00035 (MPG75_00035) recG 5025..6890 (+) 1866 WP_245039338.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54665.54 Da        Isoelectric Point: 6.5953

>NTDB_id=667545 MPG75_RS00010 WP_245039336.1 1591..3024(+) (comH) [Helicobacter pylori strain Hpfe029]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPQQMPSLNAPIQKPQNKPTSSQQSFQNFPYTESKLGSKNPKNSLLQPLAT
PNKISSANEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNADINEHDESNENRDNGEKQAIRDPNVKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSKVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=667545 MPG75_RS00010 WP_245039336.1 1591..3024(+) (comH) [Helicobacter pylori strain Hpfe029]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCTAGAAATACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACAGCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTTTTCAAAACTTTCCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAGAACAACCTTTTCATAACGCCACCCACTGAAAAGACACTCCCTAACAATACCCCTAACGCTGATATTAATGAAC
ACGATGAAAGCAATGAAAATAGGGATAATGGGGAAAAACAAGCGATTAGAGATCCTAATGTCAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACAATTAGGCAATGCTATTTGATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGATGATCAAACAG
AGCCAACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGTATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGTATTGAAAATTCTAAAGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAATGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.067

100

0.925

Multiple sequence alignment