Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG16_RS07055 Genome accession   NZ_CP094143
Coordinates   1496460..1497773 (-) Length   437 a.a.
NCBI ID   WP_245108390.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe032     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1491460..1502773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG16_RS07025 (MPG16_07025) nadC 1491923..1492744 (-) 822 WP_245108384.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG16_RS07030 (MPG16_07030) nadA 1492744..1493754 (-) 1011 WP_245108385.1 quinolinate synthase NadA -
  MPG16_RS07035 (MPG16_07035) - 1493741..1494547 (-) 807 WP_245108386.1 phosphatidylserine decarboxylase -
  MPG16_RS07040 (MPG16_07040) - 1494544..1495047 (-) 504 WP_000953085.1 hypothetical protein -
  MPG16_RS07045 (MPG16_07045) - 1495060..1495554 (-) 495 WP_014537179.1 hypothetical protein -
  MPG16_RS07050 (MPG16_07050) mqnP 1495547..1496389 (-) 843 WP_245108388.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG16_RS07055 (MPG16_07055) comEC/comE3 1496460..1497773 (-) 1314 WP_245108390.1 ComEC/Rec2 family competence protein Machinery gene
  MPG16_RS07060 (MPG16_07060) - 1497770..1499230 (-) 1461 WP_245108391.1 replicative DNA helicase -
  MPG16_RS07065 (MPG16_07065) - 1499241..1500641 (-) 1401 WP_245108393.1 NAD(P)H-hydrate dehydratase -
  MPG16_RS07070 (MPG16_07070) crdS 1500644..1501846 (-) 1203 WP_245108945.1 copper-sensing histidine kinase CrdS -
  MPG16_RS07075 (MPG16_07075) crdR 1501812..1502453 (-) 642 WP_245108394.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50027.86 Da        Isoelectric Point: 9.8315

>NTDB_id=667540 MPG16_RS07055 WP_245108390.1 1496460..1497773(-) (comEC/comE3) [Helicobacter pylori strain Hpfe032]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSTLAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHAQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667540 MPG16_RS07055 WP_245108390.1 1496460..1497773(-) (comEC/comE3) [Helicobacter pylori strain Hpfe032]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCACTTTAGCGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGATAGGGCTAATGCGCTGGGGATCAACCACTTACTGGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACGCTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATAGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTGACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment