Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG02_RS06885 Genome accession   NZ_CP094142
Coordinates   1435927..1437240 (-) Length   437 a.a.
NCBI ID   WP_245075292.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe033     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1430927..1442240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG02_RS06855 (MPG02_06855) nadC 1431390..1432211 (-) 822 WP_245075288.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG02_RS06860 (MPG02_06860) nadA 1432211..1433221 (-) 1011 WP_245075289.1 quinolinate synthase NadA -
  MPG02_RS06865 (MPG02_06865) - 1433211..1434014 (-) 804 WP_245075290.1 phosphatidylserine decarboxylase -
  MPG02_RS06870 (MPG02_06870) - 1434011..1434514 (-) 504 WP_000953117.1 hypothetical protein -
  MPG02_RS06875 (MPG02_06875) - 1434527..1435021 (-) 495 WP_180453631.1 hypothetical protein -
  MPG02_RS06880 (MPG02_06880) mqnP 1435014..1435856 (-) 843 WP_245075291.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG02_RS06885 (MPG02_06885) comEC/comE3 1435927..1437240 (-) 1314 WP_245075292.1 ComEC/Rec2 family competence protein Machinery gene
  MPG02_RS06890 (MPG02_06890) - 1437237..1438703 (-) 1467 WP_245075293.1 replicative DNA helicase -
  MPG02_RS06895 (MPG02_06895) - 1438714..1440108 (-) 1395 WP_245075294.1 NAD(P)H-hydrate dehydratase -
  MPG02_RS06900 (MPG02_06900) crdS 1440111..1441313 (-) 1203 WP_075653460.1 copper-sensing histidine kinase CrdS -
  MPG02_RS06905 (MPG02_06905) crdR 1441279..1441920 (-) 642 WP_021306498.1 copper response regulator transcription factor CrdR -
  MPG02_RS06910 (MPG02_06910) - 1442006..1442230 (-) 225 Protein_1358 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50149.16 Da        Isoelectric Point: 9.8860

>NTDB_id=667521 MPG02_RS06885 WP_245075292.1 1435927..1437240(-) (comEC/comE3) [Helicobacter pylori strain Hpfe033]
MKDKTFQGAFELLATPKEYLLCGVILSLLLILNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLTLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLMIPTISVSSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667521 MPG02_RS06885 WP_245075292.1 1435927..1437240(-) (comEC/comE3) [Helicobacter pylori strain Hpfe033]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATATTTGTTATGTGGGGTTATTTTAAG
CCTTTTGTTAATACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAGATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGAAAAATCAAATCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTGTATCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGACTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAAGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATAGCA
TTTTAAACATGCCTTTAATGATCCCTACAATTTCGGTTTCTTCGCCTTTGTGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941

Multiple sequence alignment