Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG02_RS05405 Genome accession   NZ_CP094142
Coordinates   1135364..1135768 (-) Length   134 a.a.
NCBI ID   WP_245075136.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1130364..1140768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG02_RS05365 (MPG02_05365) - 1130564..1131649 (-) 1086 WP_245075129.1 hypothetical protein -
  MPG02_RS05370 (MPG02_05370) - 1131639..1132424 (-) 786 WP_245075131.1 hypothetical protein -
  MPG02_RS05375 (MPG02_05375) - 1132424..1132805 (-) 382 Protein_1053 DUF1294 domain-containing protein -
  MPG02_RS05380 (MPG02_05380) - 1133134..1133523 (-) 390 WP_245075132.1 lysozyme -
  MPG02_RS05385 (MPG02_05385) - 1133610..1133792 (-) 183 WP_014535756.1 lysozyme -
  MPG02_RS05390 (MPG02_05390) - 1133803..1134363 (-) 561 WP_245075134.1 hypothetical protein -
  MPG02_RS05395 (MPG02_05395) - 1134347..1134685 (-) 339 WP_000699916.1 hypothetical protein -
  MPG02_RS05400 (MPG02_05400) - 1134870..1135232 (-) 363 WP_245075135.1 tetratricopeptide repeat protein -
  MPG02_RS05405 (MPG02_05405) dprB 1135364..1135768 (-) 405 WP_245075136.1 Holliday junction resolvase RuvX Machinery gene
  MPG02_RS05410 (MPG02_05410) dprA 1135765..1136565 (-) 801 WP_245075137.1 DNA-processing protein DprA Machinery gene
  MPG02_RS05415 (MPG02_05415) minE 1136577..1136810 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG02_RS05420 (MPG02_05420) minD 1136807..1137613 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG02_RS05425 (MPG02_05425) ilvC 1137637..1138629 (-) 993 WP_245075138.1 ketol-acid reductoisomerase -
  MPG02_RS05435 (MPG02_05435) - 1138878..1139660 (+) 783 WP_245075139.1 NAD+ synthase -
  MPG02_RS05440 (MPG02_05440) - 1139657..1140595 (+) 939 WP_245075140.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15101.66 Da        Isoelectric Point: 8.6437

>NTDB_id=667517 MPG02_RS05405 WP_245075136.1 1135364..1135768(-) (dprB) [Helicobacter pylori strain Hpfe033]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILECYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667517 MPG02_RS05405 WP_245075136.1 1135364..1135768(-) (dprB) [Helicobacter pylori strain Hpfe033]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TAGGCAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGTGCTATTGCCAACAGGTTTTAAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948

Multiple sequence alignment