Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG83_RS06960 Genome accession   NZ_CP094140
Coordinates   1463315..1464628 (-) Length   437 a.a.
NCBI ID   WP_245071201.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe035     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1458315..1469628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG83_RS06930 (MPG83_06930) nadC 1458778..1459599 (-) 822 WP_245071192.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG83_RS06935 (MPG83_06935) nadA 1459599..1460609 (-) 1011 WP_245071194.1 quinolinate synthase NadA -
  MPG83_RS06940 (MPG83_06940) - 1460599..1461402 (-) 804 WP_245071196.1 phosphatidylserine decarboxylase -
  MPG83_RS06945 (MPG83_06945) - 1461399..1461902 (-) 504 WP_180495963.1 helix-turn-helix domain-containing protein -
  MPG83_RS06950 (MPG83_06950) - 1461915..1462409 (-) 495 WP_014537179.1 hypothetical protein -
  MPG83_RS06955 (MPG83_06955) mqnP 1462402..1463286 (-) 885 WP_245071199.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG83_RS06960 (MPG83_06960) comEC/comE3 1463315..1464628 (-) 1314 WP_245071201.1 ComEC/Rec2 family competence protein Machinery gene
  MPG83_RS06965 (MPG83_06965) - 1464625..1466091 (-) 1467 WP_245071203.1 replicative DNA helicase -
  MPG83_RS06970 (MPG83_06970) - 1466102..1467496 (-) 1395 WP_245071205.1 NAD(P)H-hydrate dehydratase -
  MPG83_RS06975 (MPG83_06975) crdS 1467499..1468701 (-) 1203 WP_245072211.1 copper-sensing histidine kinase CrdS -
  MPG83_RS06980 (MPG83_06980) crdR 1468667..1469308 (-) 642 WP_245071207.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50171.26 Da        Isoelectric Point: 9.7600

>NTDB_id=667500 MPG83_RS06960 WP_245071201.1 1463315..1464628(-) (comEC/comE3) [Helicobacter pylori strain Hpfe035]
MKDKTFQGAFELLTTPKECLLCGVILSLLLVLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLVRKQDFKSHWHHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGVHLFLT
ILSMRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667500 MPG83_RS06960 WP_245071201.1 1463315..1464628(-) (comEC/comE3) [Helicobacter pylori strain Hpfe035]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATGCTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGTGCTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACAAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAGTGCGAAAACAAGATTTCAAATCGCATT
GGCACCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTATATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGGGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGACTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATAGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTGAGCATGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment