Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG83_RS05520 Genome accession   NZ_CP094140
Coordinates   1166827..1167237 (-) Length   136 a.a.
NCBI ID   WP_245070877.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe035     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1161827..1172237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG83_RS05480 (MPG83_05480) - 1162221..1163312 (-) 1092 WP_245070868.1 hypothetical protein -
  MPG83_RS05485 (MPG83_05485) - 1163302..1164087 (-) 786 WP_245070870.1 hypothetical protein -
  MPG83_RS05490 (MPG83_05490) - 1164087..1164473 (-) 387 WP_245070872.1 DUF1294 domain-containing protein -
  MPG83_RS05495 (MPG83_05495) - 1164807..1164968 (-) 162 WP_014536434.1 lysozyme -
  MPG83_RS05500 (MPG83_05500) - 1165120..1165488 (-) 369 WP_180459410.1 glycoside hydrolase family protein -
  MPG83_RS05505 (MPG83_05505) - 1165499..1166059 (-) 561 WP_180459408.1 hypothetical protein -
  MPG83_RS05510 (MPG83_05510) - 1166043..1166381 (-) 339 WP_154435107.1 hypothetical protein -
  MPG83_RS05515 (MPG83_05515) - 1166570..1166860 (-) 291 WP_342370063.1 tetratricopeptide repeat protein -
  MPG83_RS05520 (MPG83_05520) dprB 1166827..1167237 (-) 411 WP_245070877.1 Holliday junction resolvase RuvX Machinery gene
  MPG83_RS05525 (MPG83_05525) dprA 1167234..1168034 (-) 801 WP_245070879.1 DNA-processing protein DprA Machinery gene
  MPG83_RS05530 (MPG83_05530) minE 1168046..1168279 (-) 234 WP_000051424.1 cell division topological specificity factor MinE -
  MPG83_RS05535 (MPG83_05535) minD 1168276..1169082 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG83_RS05540 (MPG83_05540) ilvC 1169106..1170098 (-) 993 WP_245070881.1 ketol-acid reductoisomerase -
  MPG83_RS05550 (MPG83_05550) - 1170345..1171127 (+) 783 WP_245070883.1 NAD+ synthase -
  MPG83_RS05555 (MPG83_05555) - 1171124..1172062 (+) 939 WP_245070886.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15490.05 Da        Isoelectric Point: 9.1283

>NTDB_id=667496 MPG83_RS05520 WP_245070877.1 1166827..1167237(-) (dprB) [Helicobacter pylori strain Hpfe035]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFNGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKRVV

Nucleotide


Download         Length: 411 bp        

>NTDB_id=667496 MPG83_RS05520 WP_245070877.1 1166827..1167237(-) (dprB) [Helicobacter pylori strain Hpfe035]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAATGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAATAAGCGGCT
CGCTATTAAAGATGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GTGTGGTTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

97.059

0.934

Multiple sequence alignment