Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG83_RS00010 Genome accession   NZ_CP094140
Coordinates   1597..3030 (+) Length   477 a.a.
NCBI ID   WP_245071316.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe035     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG83_RS00005 (MPG83_00005) dnaA 1..1368 (+) 1368 WP_245071315.1 chromosomal replication initiator protein DnaA -
  MPG83_RS00010 (MPG83_00010) comH 1597..3030 (+) 1434 WP_245071316.1 competence protein Machinery gene
  MPG83_RS00020 (MPG83_00020) - 3208..3960 (+) 753 WP_000767569.1 exodeoxyribonuclease III -
  MPG83_RS00025 (MPG83_00025) - 3957..4592 (-) 636 WP_000668030.1 outer membrane protein -
  MPG83_RS00030 (MPG83_00030) - 4596..4949 (-) 354 WP_245071317.1 hypothetical protein -
  MPG83_RS00035 (MPG83_00035) recG 5031..6896 (+) 1866 WP_245071318.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54670.52 Da        Isoelectric Point: 7.0430

>NTDB_id=667484 MPG83_RS00010 WP_245071316.1 1597..3030(+) (comH) [Helicobacter pylori strain Hpfe035]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKESHQMPSLNAPIQKPQNKPTSSQQSPQNFSYSESKLGSKNPKNSLLQPLAT
PSKISSANEVKTPTNDTKPPLKHSSEDQENNLFVTPPTEKTLPNNTPNADTNEHNESNENRDNVEKQTIRDPNVKEFACG
KWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNHFTILQARSS
TEKCKRARARKDGTIRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=667484 MPG83_RS00010 WP_245071316.1 1597..3030(+) (comH) [Helicobacter pylori strain Hpfe035]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
GTTGAAAGAGTCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTAGCCACT
CCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATACTAATGAAC
ACAATGAAAGCAATGAGAATAGAGATAATGTGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCATGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTACACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACCTTTGAAGCTAAAAACCATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCCAGAGCACGAAAAGACGGCACGATTAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAAACAG
AACCAACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGTATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTACTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.067

100

0.925

Multiple sequence alignment