Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG53_RS06905 Genome accession   NZ_CP094139
Coordinates   1430211..1431524 (-) Length   437 a.a.
NCBI ID   WP_245060317.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe036     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1425211..1436524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG53_RS06875 (MPG53_06875) nadC 1425674..1426495 (-) 822 WP_245060314.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG53_RS06880 (MPG53_06880) nadA 1426495..1427505 (-) 1011 WP_245060315.1 quinolinate synthase NadA -
  MPG53_RS06885 (MPG53_06885) - 1427495..1428298 (-) 804 WP_180459968.1 phosphatidylserine decarboxylase -
  MPG53_RS06890 (MPG53_06890) - 1428295..1428798 (-) 504 WP_000953106.1 hypothetical protein -
  MPG53_RS06895 (MPG53_06895) - 1428811..1429305 (-) 495 WP_245060316.1 hypothetical protein -
  MPG53_RS06900 (MPG53_06900) mqnP 1429298..1430182 (-) 885 WP_154403894.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG53_RS06905 (MPG53_06905) comEC/comE3 1430211..1431524 (-) 1314 WP_245060317.1 ComEC/Rec2 family competence protein Machinery gene
  MPG53_RS06910 (MPG53_06910) - 1431521..1432981 (-) 1461 WP_245060318.1 replicative DNA helicase -
  MPG53_RS06915 (MPG53_06915) - 1432992..1434386 (-) 1395 WP_245060319.1 NAD(P)H-hydrate dehydratase -
  MPG53_RS06920 (MPG53_06920) crdS 1434389..1435591 (-) 1203 WP_245061296.1 copper-sensing histidine kinase CrdS -
  MPG53_RS06925 (MPG53_06925) crdR 1435557..1436198 (-) 642 WP_245060320.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50259.35 Da        Isoelectric Point: 9.8860

>NTDB_id=667479 MPG53_RS06905 WP_245060317.1 1430211..1431524(-) (comEC/comE3) [Helicobacter pylori strain Hpfe036]
MKDKTFQGAFELLTTPKEYLLCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRYTQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLMIPTISVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667479 MPG53_RS06905 WP_245060317.1 1430211..1431524(-) (comEC/comE3) [Helicobacter pylori strain Hpfe036]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATTGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAATG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACACGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTAAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment