Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OG936_RS04335 Genome accession   NZ_CP108846
Coordinates   943531..944628 (-) Length   365 a.a.
NCBI ID   WP_406492679.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00846     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 938531..949628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG936_RS04315 (OG936_04340) - 939308..939862 (-) 555 WP_266745116.1 adenine phosphoribosyltransferase -
  OG936_RS04320 (OG936_04345) secF 939859..940977 (-) 1119 WP_406492673.1 protein translocase subunit SecF -
  OG936_RS04325 (OG936_04350) secD 940979..942727 (-) 1749 WP_406492675.1 protein translocase subunit SecD -
  OG936_RS04330 (OG936_04355) yajC 942875..943366 (-) 492 WP_406492677.1 preprotein translocase subunit YajC -
  OG936_RS04335 (OG936_04360) ruvB 943531..944628 (-) 1098 WP_406492679.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OG936_RS04340 (OG936_04365) ruvA 944953..945576 (-) 624 WP_383753479.1 Holliday junction branch migration protein RuvA -
  OG936_RS04345 (OG936_04370) ruvC 945573..946148 (-) 576 WP_406492681.1 crossover junction endodeoxyribonuclease RuvC -
  OG936_RS04350 (OG936_04375) - 946286..947038 (-) 753 WP_266745123.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OG936_RS04355 (OG936_04380) pdxT 947100..947693 (-) 594 WP_266745124.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  OG936_RS04360 (OG936_04385) pdxS 947700..948620 (-) 921 WP_406492683.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  OG936_RS04365 (OG936_04390) - 948788..949285 (-) 498 WP_266752096.1 hypothetical protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39442.04 Da        Isoelectric Point: 4.9387

>NTDB_id=667458 OG936_RS04335 WP_406492679.1 943531..944628(-) (ruvB) [Streptomyces sp. NBC_00846]
MNWDETGPDTEEPLGERPSERLDERLVDADADGEDTAVEAALRPKDLDEFVGQEKVREQLDLVLKAARARGATADHVLLS
GAPGLGKTTLSMIIATEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGK
GPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYTPTELERVIHRSARLLDVAIDMEGAAEIAGRSRGTPR
IANRLLRRVRDYAQVKADGRIDRAVASAALRVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVA
EPFLVREGLLARTPRGRVATPAAWVHLGLVPPQHDGKGQQGLFRA

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=667458 OG936_RS04335 WP_406492679.1 943531..944628(-) (ruvB) [Streptomyces sp. NBC_00846]
ATGAACTGGGACGAGACCGGACCCGACACCGAAGAGCCGCTCGGCGAGCGCCCGAGCGAGCGGCTGGACGAGCGCCTTGT
CGACGCCGACGCGGACGGCGAGGACACCGCGGTCGAAGCGGCGCTGCGCCCGAAGGACCTCGATGAATTCGTCGGTCAGG
AGAAGGTGCGCGAACAGCTCGACCTGGTCCTCAAGGCGGCCAGGGCCCGCGGTGCCACCGCCGACCATGTCCTGCTCTCC
GGCGCCCCCGGCCTCGGCAAGACCACCCTCTCCATGATCATCGCGACCGAGATGGGCGCACCGATCCGGATCACCTCCGG
CCCCGCCATCCAGCATGCGGGTGATCTTGCCGCGATTCTCTCCTCGCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGA
TCCACCGCATGTCGCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAG
GGCCCCGGCGCCACCGCCATCCCGCTGGAACTGCCGCCGTTCACCCTGGTGGGCGCCACCACCAGGGCCGGACTACTGCC
GCCCCCGCTGCGTGACCGCTTCGGCTTCACCGGCCACATGGAGTTCTACACCCCCACCGAACTGGAACGTGTCATCCACC
GTTCCGCGCGTCTCCTCGACGTGGCGATAGACATGGAGGGTGCCGCCGAGATCGCCGGGCGCTCCCGCGGCACCCCCCGT
ATCGCCAACCGGCTGTTGCGCCGCGTCCGGGACTACGCCCAGGTCAAGGCGGACGGGCGGATCGACCGCGCCGTCGCCTC
CGCGGCCCTCAGGGTCTACGAGGTCGATGCCCGAGGTCTCGACCGGCTGGACCGGGCGGTGCTCGGCGCCCTGCTGAAAC
TCTTCGGCGGCGGTCCCGTCGGGCTGTCCACCCTCGCGGTGGCCGTGGGCGAGGAGCGCGAAACGGTCGAGGAGGTCGCC
GAGCCCTTCCTGGTGCGGGAAGGGCTGCTGGCCAGGACGCCGCGAGGGCGCGTCGCGACACCCGCGGCGTGGGTCCACCT
CGGTCTCGTGCCCCCGCAGCATGATGGAAAGGGACAACAGGGCCTGTTCAGGGCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(278-347)

RuvB AAA lid domain (AAA_lid_4)

(203-276)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(42-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.892

91.507

0.493
  ruvB Synechocystis sp. PCC 6803

54.14

86.027

0.466
  ruvB Streptococcus pneumoniae TIGR4

52.16

88.767

0.463
  ruvB Streptococcus pneumoniae R6

52.16

88.767

0.463
  ruvB Streptococcus pneumoniae D39

52.16

88.767

0.463
  ruvB Helicobacter pylori 26695

50.313

87.671

0.441

Multiple sequence alignment