Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG35_RS06975 Genome accession   NZ_CP094138
Coordinates   1456991..1458304 (-) Length   437 a.a.
NCBI ID   WP_245019536.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe037     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1451991..1463304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG35_RS06945 (MPG35_06945) nadC 1452454..1453275 (-) 822 WP_245019532.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG35_RS06950 (MPG35_06950) nadA 1453275..1454285 (-) 1011 WP_245019533.1 quinolinate synthase NadA -
  MPG35_RS06955 (MPG35_06955) - 1454275..1455078 (-) 804 WP_245019534.1 phosphatidylserine decarboxylase -
  MPG35_RS06960 (MPG35_06960) - 1455075..1455578 (-) 504 WP_000953102.1 hypothetical protein -
  MPG35_RS06965 (MPG35_06965) - 1455591..1456085 (-) 495 WP_245019535.1 hypothetical protein -
  MPG35_RS06970 (MPG35_06970) mqnP 1456078..1456920 (-) 843 WP_245020023.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG35_RS06975 (MPG35_06975) comEC/comE3 1456991..1458304 (-) 1314 WP_245019536.1 ComEC/Rec2 family competence protein Machinery gene
  MPG35_RS06980 (MPG35_06980) - 1458301..1459761 (-) 1461 WP_245019537.1 replicative DNA helicase -
  MPG35_RS06985 (MPG35_06985) - 1459772..1461172 (-) 1401 WP_245019538.1 NAD(P)H-hydrate dehydratase -
  MPG35_RS06990 (MPG35_06990) crdS 1461175..1462377 (-) 1203 WP_245020024.1 copper-sensing histidine kinase CrdS -
  MPG35_RS06995 (MPG35_06995) crdR 1462343..1462984 (-) 642 WP_001169802.1 copper response regulator transcription factor CrdR -
  MPG35_RS07000 (MPG35_07000) - 1463071..1463295 (-) 225 Protein_1363 restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50138.10 Da        Isoelectric Point: 9.8315

>NTDB_id=667458 MPG35_RS06975 WP_245019536.1 1456991..1458304(-) (comEC/comE3) [Helicobacter pylori strain Hpfe037]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
VYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSTHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKNSSFLARSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTIFVFSPLWLLGAHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667458 MPG35_RS06975 WP_245019536.1 1456991..1458304(-) (comEC/comE3) [Helicobacter pylori strain Hpfe037]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
GTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGACAGCACTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAGCACACTCAAGCCTTTTTTAAAAACTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTAGATAGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGTTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941

Multiple sequence alignment