Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG35_RS05380 Genome accession   NZ_CP094138
Coordinates   1136523..1136927 (-) Length   134 a.a.
NCBI ID   WP_220910292.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1131523..1141927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG35_RS05340 (MPG35_05340) - 1131642..1132818 (-) 1177 Protein_1038 hypothetical protein -
  MPG35_RS05345 (MPG35_05345) - 1132808..1133593 (-) 786 WP_245019351.1 hypothetical protein -
  MPG35_RS05350 (MPG35_05350) - 1133593..1133918 (-) 326 Protein_1040 DUF1294 domain-containing protein -
  MPG35_RS05355 (MPG35_05355) - 1134270..1134431 (-) 162 WP_001871784.1 hypothetical protein -
  MPG35_RS05360 (MPG35_05360) - 1134451..1134951 (-) 501 WP_245019352.1 glycoside hydrolase family protein -
  MPG35_RS05365 (MPG35_05365) - 1134962..1135522 (-) 561 WP_245019353.1 hypothetical protein -
  MPG35_RS05370 (MPG35_05370) - 1135506..1135844 (-) 339 WP_000699911.1 hypothetical protein -
  MPG35_RS05375 (MPG35_05375) - 1136035..1136391 (-) 357 WP_245019354.1 tetratricopeptide repeat protein -
  MPG35_RS05380 (MPG35_05380) dprB 1136523..1136927 (-) 405 WP_220910292.1 Holliday junction resolvase RuvX Machinery gene
  MPG35_RS05385 (MPG35_05385) dprA 1136924..1137724 (-) 801 WP_245019355.1 DNA-processing protein DprA Machinery gene
  MPG35_RS05390 (MPG35_05390) minE 1137736..1137969 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG35_RS05395 (MPG35_05395) minD 1137966..1138772 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG35_RS05400 (MPG35_05400) ilvC 1138797..1139789 (-) 993 WP_245019356.1 ketol-acid reductoisomerase -
  MPG35_RS05410 (MPG35_05410) - 1140039..1140821 (+) 783 WP_245019357.1 NAD+ synthase -
  MPG35_RS05415 (MPG35_05415) - 1140818..1141756 (+) 939 WP_245019358.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15253.84 Da        Isoelectric Point: 9.8304

>NTDB_id=667454 MPG35_RS05380 WP_220910292.1 1136523..1136927(-) (dprB) [Helicobacter pylori strain Hpfe037]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGK
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667454 MPG35_RS05380 WP_220910292.1 1136523..1136927(-) (dprB) [Helicobacter pylori strain Hpfe037]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTGAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATCAAACTTTTGGATTTTAAGGGCAAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment