Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | OG365_RS29580 | Genome accession | NZ_CP108837 |
| Coordinates | 6367512..6368585 (+) | Length | 357 a.a. |
| NCBI ID | WP_406738863.1 | Uniprot ID | - |
| Organism | Streptomyces sp. NBC_00853 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 6362512..6373585
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OG365_RS29550 (OG365_29565) | - | 6363012..6363554 (+) | 543 | WP_327386384.1 | hypothetical protein | - |
| OG365_RS29555 (OG365_29570) | pdxS | 6363704..6364621 (+) | 918 | WP_030010552.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| OG365_RS29560 (OG365_29575) | pdxT | 6364628..6365221 (+) | 594 | WP_327386385.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| OG365_RS29565 (OG365_29580) | - | 6365279..6366031 (+) | 753 | WP_189740212.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| OG365_RS29570 (OG365_29585) | ruvC | 6366198..6366728 (+) | 531 | WP_327388698.1 | crossover junction endodeoxyribonuclease RuvC | - |
| OG365_RS29575 (OG365_29590) | ruvA | 6366725..6367357 (+) | 633 | WP_327386386.1 | Holliday junction branch migration protein RuvA | - |
| OG365_RS29580 (OG365_29595) | ruvB | 6367512..6368585 (+) | 1074 | WP_406738863.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| OG365_RS29585 (OG365_29600) | yajC | 6368751..6369224 (+) | 474 | WP_327386388.1 | preprotein translocase subunit YajC | - |
| OG365_RS29590 (OG365_29605) | secD | 6369378..6371180 (+) | 1803 | WP_406738864.1 | protein translocase subunit SecD | - |
| OG365_RS29595 (OG365_29610) | secF | 6371184..6372239 (+) | 1056 | WP_327386390.1 | protein translocase subunit SecF | - |
| OG365_RS29600 (OG365_29615) | - | 6372236..6372790 (+) | 555 | WP_327386391.1 | adenine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 38149.43 Da Isoelectric Point: 4.8947
>NTDB_id=667443 OG365_RS29580 WP_406738863.1 6367512..6368585(+) (ruvB) [Streptomyces sp. NBC_00853]
MNWDDETNVDESERLVAASADGEDTAVEAALRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLS
MIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPEELERVIHRSARLLDVEIDTAGAAEIAGRSRGTPRIANRLLRRVRD
YAQVRADGVINREVAGTALQVYEVDGRGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLVPPQHGGSGSSGQQGLFGA
MNWDDETNVDESERLVAASADGEDTAVEAALRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLS
MIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPEELERVIHRSARLLDVEIDTAGAAEIAGRSRGTPRIANRLLRRVRD
YAQVRADGVINREVAGTALQVYEVDGRGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLVPPQHGGSGSSGQQGLFGA
Nucleotide
Download Length: 1074 bp
>NTDB_id=667443 OG365_RS29580 WP_406738863.1 6367512..6368585(+) (ruvB) [Streptomyces sp. NBC_00853]
GTGAACTGGGACGACGAGACCAACGTAGACGAGAGCGAGCGACTCGTCGCGGCCTCGGCCGACGGCGAGGACACCGCCGT
CGAGGCGGCGCTGCGCCCCAAGGACCTCGGCGAGTTCGTCGGCCAGGAGAAGGTCCGCCAGCAGCTGGACCTCGTCCTCA
AGGCGGCCCGCCAGCGCGGAGCCACCGCCGACCACGTCCTGCTCTCCGGCGCGCCCGGCCTCGGCAAGACCACCCTGTCC
ATGATCATCGCGGCCGAGATGGGCGCGCCCATCCGCATCACCTCCGGCCCCGCCATCCAGCACGCCGGCGACCTCGCGGC
GATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGC
TCTACATGGCCATGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGGCCCGGGGCCACCGCGATCCCGCTGGAGCTG
CCGCCCTTCACCCTGGTCGGCGCCACCACCCGGGCCGGACTGCTGCCCCCGCCGCTGCGGGACCGCTTCGGCTTCACCGG
GCACATGGAGTTCTACGCCCCCGAGGAGCTGGAACGCGTCATCCACCGCTCCGCCCGCCTCCTCGACGTGGAGATCGACA
CCGCCGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGCACCCCGCGCATCGCCAACCGGCTGCTGCGCCGCGTCCGCGAC
TACGCCCAGGTCCGGGCGGACGGCGTGATCAACCGCGAGGTGGCCGGTACCGCCCTCCAGGTGTACGAGGTGGACGGGCG
CGGCCTCGACCGACTGGATCGCGCCGTTCTCGAAGCCCTGCTCAAGCTCTTCGGCGGCGGACCCGTGGGCCTGTCCACCC
TCGCCGTGGCCGTCGGTGAGGAGCGGGAGACCGTGGAGGAGGTTGCGGAGCCCTTCCTGGTCCGCGAGGGGCTGCTCGCG
CGTACTCCCCGGGGGCGGGTGGCGACCCCTGCCGCATGGGCTCACCTGGGACTCGTCCCGCCGCAGCACGGCGGGAGTGG
ATCAAGCGGACAACAGGGCTTGTTCGGGGCCTGA
GTGAACTGGGACGACGAGACCAACGTAGACGAGAGCGAGCGACTCGTCGCGGCCTCGGCCGACGGCGAGGACACCGCCGT
CGAGGCGGCGCTGCGCCCCAAGGACCTCGGCGAGTTCGTCGGCCAGGAGAAGGTCCGCCAGCAGCTGGACCTCGTCCTCA
AGGCGGCCCGCCAGCGCGGAGCCACCGCCGACCACGTCCTGCTCTCCGGCGCGCCCGGCCTCGGCAAGACCACCCTGTCC
ATGATCATCGCGGCCGAGATGGGCGCGCCCATCCGCATCACCTCCGGCCCCGCCATCCAGCACGCCGGCGACCTCGCGGC
GATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGC
TCTACATGGCCATGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGGCCCGGGGCCACCGCGATCCCGCTGGAGCTG
CCGCCCTTCACCCTGGTCGGCGCCACCACCCGGGCCGGACTGCTGCCCCCGCCGCTGCGGGACCGCTTCGGCTTCACCGG
GCACATGGAGTTCTACGCCCCCGAGGAGCTGGAACGCGTCATCCACCGCTCCGCCCGCCTCCTCGACGTGGAGATCGACA
CCGCCGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGCACCCCGCGCATCGCCAACCGGCTGCTGCGCCGCGTCCGCGAC
TACGCCCAGGTCCGGGCGGACGGCGTGATCAACCGCGAGGTGGCCGGTACCGCCCTCCAGGTGTACGAGGTGGACGGGCG
CGGCCTCGACCGACTGGATCGCGCCGTTCTCGAAGCCCTGCTCAAGCTCTTCGGCGGCGGACCCGTGGGCCTGTCCACCC
TCGCCGTGGCCGTCGGTGAGGAGCGGGAGACCGTGGAGGAGGTTGCGGAGCCCTTCCTGGTCCGCGAGGGGCTGCTCGCG
CGTACTCCCCGGGGGCGGGTGGCGACCCCTGCCGCATGGGCTCACCTGGGACTCGTCCCGCCGCAGCACGGCGGGAGTGG
ATCAAGCGGACAACAGGGCTTGTTCGGGGCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.474 |
92.717 |
0.496 |
| ruvB | Streptococcus pneumoniae TIGR4 |
52.16 |
90.756 |
0.473 |
| ruvB | Streptococcus pneumoniae R6 |
52.16 |
90.756 |
0.473 |
| ruvB | Streptococcus pneumoniae D39 |
52.16 |
90.756 |
0.473 |
| ruvB | Synechocystis sp. PCC 6803 |
52.548 |
87.955 |
0.462 |
| ruvB | Helicobacter pylori 26695 |
49.53 |
89.356 |
0.443 |