Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG13_RS06980 Genome accession   NZ_CP094137
Coordinates   1454290..1455603 (-) Length   437 a.a.
NCBI ID   WP_245083163.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe038     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1449290..1460603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG13_RS06950 (MPG13_06950) nadC 1449753..1450574 (-) 822 WP_245083154.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG13_RS06955 (MPG13_06955) nadA 1450574..1451584 (-) 1011 WP_245083157.1 quinolinate synthase NadA -
  MPG13_RS06960 (MPG13_06960) - 1451571..1452377 (-) 807 WP_212794127.1 phosphatidylserine decarboxylase -
  MPG13_RS06965 (MPG13_06965) - 1452374..1452877 (-) 504 WP_245083160.1 helix-turn-helix domain-containing protein -
  MPG13_RS06970 (MPG13_06970) - 1452890..1453384 (-) 495 WP_014537179.1 hypothetical protein -
  MPG13_RS06975 (MPG13_06975) mqnP 1453377..1454261 (-) 885 WP_075645930.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG13_RS06980 (MPG13_06980) comEC/comE3 1454290..1455603 (-) 1314 WP_245083163.1 ComEC/Rec2 family competence protein Machinery gene
  MPG13_RS06985 (MPG13_06985) - 1455600..1457060 (-) 1461 WP_245083166.1 replicative DNA helicase -
  MPG13_RS06990 (MPG13_06990) - 1457071..1458465 (-) 1395 WP_245083169.1 NAD(P)H-hydrate dehydratase -
  MPG13_RS06995 (MPG13_06995) crdS 1458468..1459670 (-) 1203 WP_245084356.1 copper-sensing histidine kinase CrdS -
  MPG13_RS07000 (MPG13_07000) crdR 1459636..1460277 (-) 642 WP_024774021.1 copper response regulator transcription factor CrdR -
  MPG13_RS07005 (MPG13_07005) - 1460365..1460589 (-) 225 Protein_1368 type II restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50088.00 Da        Isoelectric Point: 9.8368

>NTDB_id=667438 MPG13_RS06980 WP_245083163.1 1454290..1455603(-) (comEC/comE3) [Helicobacter pylori strain Hpfe038]
MKDKTFQGAFELLTTPKEYLVCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFMGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
TLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLMIPTISVFSPLWLLGAHLFLT
ILSARFFKAYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667438 MPG13_RS06980 WP_245083163.1 1454290..1455603(-) (comEC/comE3) [Helicobacter pylori strain Hpfe038]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACCTGGTGTGTGGGGTTATTTTGAG
CCTTTTGTTAGCACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATGGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCAAGCGTGTATTTCCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGATTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
ACACTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGCTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941

Multiple sequence alignment