Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG13_RS05485 Genome accession   NZ_CP094137
Coordinates   1145471..1145875 (-) Length   134 a.a.
NCBI ID   WP_245082664.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140471..1150875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG13_RS05445 (MPG13_05445) - 1140633..1141735 (-) 1103 Protein_1060 hypothetical protein -
  MPG13_RS05450 (MPG13_05450) - 1141725..1142510 (-) 786 WP_245082652.1 hypothetical protein -
  MPG13_RS05455 (MPG13_05455) - 1142510..1142896 (-) 387 WP_180601237.1 DUF1294 domain-containing protein -
  MPG13_RS05460 (MPG13_05460) - 1143220..1143609 (-) 390 WP_245082653.1 lysozyme -
  MPG13_RS05465 (MPG13_05465) - 1143563..1143775 (-) 213 WP_245082655.1 lysozyme -
  MPG13_RS05470 (MPG13_05470) - 1143914..1144474 (-) 561 WP_245082658.1 hypothetical protein -
  MPG13_RS05475 (MPG13_05475) - 1144458..1144796 (-) 339 WP_154451653.1 hypothetical protein -
  MPG13_RS05480 (MPG13_05480) - 1144989..1145345 (-) 357 WP_245082661.1 tetratricopeptide repeat protein -
  MPG13_RS05485 (MPG13_05485) dprB 1145471..1145875 (-) 405 WP_245082664.1 Holliday junction resolvase RuvX Machinery gene
  MPG13_RS05490 (MPG13_05490) dprA 1145872..1146672 (-) 801 WP_245082666.1 DNA-processing protein DprA Machinery gene
  MPG13_RS05495 (MPG13_05495) minE 1146684..1146917 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG13_RS05500 (MPG13_05500) minD 1146914..1147720 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG13_RS05505 (MPG13_05505) ilvC 1147745..1148737 (-) 993 WP_245082669.1 ketol-acid reductoisomerase -
  MPG13_RS05515 (MPG13_05515) - 1148986..1149768 (+) 783 WP_245082672.1 NAD+ synthase -
  MPG13_RS05520 (MPG13_05520) - 1149765..1150703 (+) 939 WP_245082674.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15242.73 Da        Isoelectric Point: 9.1725

>NTDB_id=667434 MPG13_RS05485 WP_245082664.1 1145471..1145875(-) (dprB) [Helicobacter pylori strain Hpfe038]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFTKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667434 MPG13_RS05485 WP_245082664.1 1145471..1145875(-) (dprB) [Helicobacter pylori strain Hpfe038]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTGAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCACCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
TGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment