Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG365_RS24135 Genome accession   NZ_CP108837
Coordinates   5235591..5237324 (-) Length   577 a.a.
NCBI ID   WP_327385503.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00853     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5230591..5242324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG365_RS24115 (OG365_24125) - 5231149..5231751 (-) 603 WP_327385500.1 hypothetical protein -
  OG365_RS24120 (OG365_24130) - 5231845..5232957 (+) 1113 WP_406738518.1 RNA polymerase sigma factor -
  OG365_RS24125 (OG365_24135) - 5233071..5233586 (-) 516 WP_327385501.1 GNAT family N-acetyltransferase -
  OG365_RS24130 (OG365_24140) rcrQ 5233672..5235594 (-) 1923 WP_327385502.1 ABC transporter ATP-binding protein Regulator
  OG365_RS24135 (OG365_24145) rcrP 5235591..5237324 (-) 1734 WP_327385503.1 ABC transporter ATP-binding protein Regulator
  OG365_RS24140 (OG365_24150) - 5237477..5238937 (-) 1461 WP_327385504.1 FGGY family carbohydrate kinase -
  OG365_RS24145 (OG365_24155) - 5239035..5239337 (-) 303 WP_030012123.1 hypothetical protein -
  OG365_RS24165 (OG365_24175) - 5240055..5241926 (-) 1872 WP_406738519.1 tyrosine-type recombinase/integrase -
  OG365_RS24170 (OG365_24180) - 5242085..5242303 (+) 219 WP_406738520.1 DNA-binding protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62561.54 Da        Isoelectric Point: 5.1643

>NTDB_id=667434 OG365_RS24135 WP_327385503.1 5235591..5237324(-) (rcrP) [Streptomyces sp. NBC_00853]
MLIRLLRTHLGTYRKPIAVLVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAFGRDVRTAIFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVKLSGV
LLAVVPVLGISVGAIVFKTRPLFRQMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFREANADLTGVSLSAGKLLAY
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCGERIQEVLDTESSVVP
PKDPVRELARRGRLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
VLDPDLLAKTVGMVPQKPYLFSGTIASNLRYGRPDASDEELWQALEVAQAKEFVSALEGGLEAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=667434 OG365_RS24135 WP_327385503.1 5235591..5237324(-) (rcrP) [Streptomyces sp. NBC_00853]
GTGCTCATACGACTTCTGCGGACCCATCTGGGTACGTACCGGAAACCCATCGCGGTGCTGGTCCTGCTGCAACTGCTGCA
GACCAGCGCCAGCCTCTACCTGCCCACACTCAACGCCGACATCATCGACAACGGTGTCGTCAACGGTGACACCGGCTACA
TCCTGCGCTTCGGCGCACTGATGCTCGGTGTCTCCCTCGTCCAGCTCGTCTGCAACGTCGGAGCCGTCTACTACGGCGCC
CGCACGGCCGCGGCCTTCGGCCGGGACGTCCGCACCGCGATCTTCGACCGCGTGCAGAGCTTCTCTGCGCGGGAGCTGGG
CCAGTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CCCTGATGGTCTCGGCCCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGAAGCTGTCGGGCGTG
CTGCTCGCGGTCGTCCCGGTGCTCGGGATCTCGGTCGGTGCGATCGTCTTCAAGACGCGGCCGCTGTTCCGCCAGATGCA
GGTGCGCCTGGACACCGTGAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGCTTCCGCGAGGCCAACGCCGACCTGACCGGCGTCTCGCTGTCCGCCGGCAAGCTCCTGGCCTAC
ATGTTCCCCACGGTCATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGTGCGATGCGCGTCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGGGGAGCGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTCGTCCCG
CCCAAGGACCCGGTGCGCGAACTCGCCCGCCGCGGCCGCCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCGGTCCTGCGCGGCGTGGACCTGGTGGCCCGACCCGGCGAGACCACGGCGGTCATCGGCTCCACCGGAAGCGGCA
AGTCCACACTGCTGGGCCTGGTCCCGCGCCTGTTCGACGCGACCGGCGGCGAGGTCCTCGTCGACGGGGAGGACGTCCGC
GTGCTCGACCCGGACCTGCTGGCCAAGACGGTCGGCATGGTGCCGCAGAAGCCGTACCTGTTCTCCGGGACCATCGCCTC
CAACCTGCGCTACGGGCGACCGGACGCGAGCGACGAAGAGCTCTGGCAGGCGCTGGAGGTGGCCCAGGCCAAGGAGTTCG
TCTCGGCGCTGGAGGGTGGCCTGGAGGCCCCCGTCAGTCAGGGCGGAACCAATGTCTCCGGCGGCCAGCGCCAACGTCTG
GCCATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GTGACGCCGACCGGATCATCGTCTTGGACGAGGGCCAGGTCGTGGGCGAGGGACGCCACCACGAACTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.007

93.241

0.392

Multiple sequence alignment