Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG365_RS24130 Genome accession   NZ_CP108837
Coordinates   5233672..5235594 (-) Length   640 a.a.
NCBI ID   WP_327385502.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00853     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5228672..5240594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG365_RS24110 (OG365_24120) - 5230088..5231152 (-) 1065 WP_406738517.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG365_RS24115 (OG365_24125) - 5231149..5231751 (-) 603 WP_327385500.1 hypothetical protein -
  OG365_RS24120 (OG365_24130) - 5231845..5232957 (+) 1113 WP_406738518.1 RNA polymerase sigma factor -
  OG365_RS24125 (OG365_24135) - 5233071..5233586 (-) 516 WP_327385501.1 GNAT family N-acetyltransferase -
  OG365_RS24130 (OG365_24140) rcrQ 5233672..5235594 (-) 1923 WP_327385502.1 ABC transporter ATP-binding protein Regulator
  OG365_RS24135 (OG365_24145) rcrP 5235591..5237324 (-) 1734 WP_327385503.1 ABC transporter ATP-binding protein Regulator
  OG365_RS24140 (OG365_24150) - 5237477..5238937 (-) 1461 WP_327385504.1 FGGY family carbohydrate kinase -
  OG365_RS24145 (OG365_24155) - 5239035..5239337 (-) 303 WP_030012123.1 hypothetical protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68867.42 Da        Isoelectric Point: 5.2929

>NTDB_id=667433 OG365_RS24130 WP_327385502.1 5233672..5235594(-) (rcrQ) [Streptomyces sp. NBC_00853]
MSGPGGRMMMGPAQRSMDFKGSGKRLLRQLAYDRAKIWGMVAAVVGSVGCAVVGPKILGEATDLVFAGIVGREMPAGTTK
QQALDGLRARGQDGMADMLAGTDFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLVMMFWISPLLALVALVTVPLSVFVAAKIGKKS
QPQFVAQWKATGALNAHIEEMYSGHSLVKVFGRQKESAAVFAEQNEALYRASFKSQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAPEQEPDAVVPERPEELRGQVTFDKV
AFRYEPDKPLIENLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRDGIGMVLQDTWL
FGGTIAQNIAYGASREVTRAEIEGAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSEPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASGSAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=667433 OG365_RS24130 WP_327385502.1 5233672..5235594(-) (rcrQ) [Streptomyces sp. NBC_00853]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGACCGGCCCAGCGGTCCATGGACTTCAAGGGTTCGGGCAAGCGGCTGCT
GCGCCAGCTCGCGTACGACCGGGCCAAGATCTGGGGCATGGTCGCGGCCGTCGTCGGCAGCGTCGGCTGCGCGGTGGTGG
GCCCGAAGATCCTCGGTGAGGCCACCGACCTGGTGTTCGCCGGGATCGTCGGCCGGGAGATGCCGGCCGGGACCACCAAG
CAGCAGGCGTTGGACGGGCTGCGCGCCCGGGGCCAGGACGGCATGGCGGACATGCTCGCCGGTACCGACTTCACCCCGGG
GCAGGGCATCGACTTCGGCGCCGTCGGGGTCGTCGCGATCTGGGCGCTGGTGGTCTTCACCTTGGCCGGCCTGCTGATGC
TGGTCGCGACGCGGCTGTCGAACCACGTCATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGTTGAGCCGGGCCACGAACGACATAGACAACATCGG
CCAGACGCTCCAGCAGACGATGGGCCAGTTGCTGAACTCGCTGCTGACCATCGTCGGCGTGCTGGTGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTACCGCTGTCGGTCTTCGTCGCCGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGGCGACCGGCGCGCTCAACGCCCACATCGAGGAGATGTACTCGGGCCACAGCCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCCGTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCCTTCA
AGTCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATAGCCGTCGTC
GGCGGGCTCCGGGTCGCCTCCGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGCGTCGCCTCGGCGGAGCGGGTGTACGAGCTGCTGG
ACGCGCCGGAGCAGGAGCCGGACGCGGTGGTTCCGGAGCGTCCGGAGGAGCTGCGCGGTCAGGTCACCTTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCCCTCACGGTCGAGCCGGGCCAGACGGTCGCGATCGT
CGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCGCCC
TCGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCGACGGCATTGGCATGGTGCTGCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGCAGAACATCGCCTACGGTGCTTCGCGCGAGGTCACGCGCGCCGAGATCGAGGGGGCGGCGCG
GGCCGCCCACGCGGACCGGTTCATCCGCACCCTGCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGGGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGAGCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTACTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGACGTACGTCCTTCGTGAT
CGCGCACCGGCTCTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGATCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCCTCGGGCAGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.032

97.188

0.389

Multiple sequence alignment