Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF95_RS07140 Genome accession   NZ_CP094136
Coordinates   1495183..1496496 (-) Length   437 a.a.
NCBI ID   WP_245066844.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe039     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1490183..1501496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF95_RS07110 (MPF95_07110) nadC 1490646..1491467 (-) 822 WP_245066839.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPF95_RS07115 (MPF95_07115) nadA 1491467..1492477 (-) 1011 WP_245066840.1 quinolinate synthase NadA -
  MPF95_RS07120 (MPF95_07120) - 1492467..1493270 (-) 804 WP_245066841.1 phosphatidylserine decarboxylase -
  MPF95_RS07125 (MPF95_07125) - 1493267..1493770 (-) 504 WP_000953102.1 hypothetical protein -
  MPF95_RS07130 (MPF95_07130) - 1493783..1494277 (-) 495 WP_000544981.1 hypothetical protein -
  MPF95_RS07135 (MPF95_07135) mqnP 1494270..1495154 (-) 885 WP_245066842.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF95_RS07140 (MPF95_07140) comEC/comE3 1495183..1496496 (-) 1314 WP_245066844.1 ComEC/Rec2 family competence protein Machinery gene
  MPF95_RS07145 (MPF95_07145) - 1496493..1497953 (-) 1461 WP_245066845.1 replicative DNA helicase -
  MPF95_RS07150 (MPF95_07150) - 1497964..1499358 (-) 1395 WP_245066846.1 NAD(P)H-hydrate dehydratase -
  MPF95_RS07155 (MPF95_07155) crdS 1499361..1500563 (-) 1203 WP_245067888.1 copper-sensing histidine kinase CrdS -
  MPF95_RS07160 (MPF95_07160) crdR 1500529..1501170 (-) 642 WP_024774021.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50096.02 Da        Isoelectric Point: 9.8315

>NTDB_id=667418 MPF95_RS07140 WP_245066844.1 1495183..1496496(-) (comEC/comE3) [Helicobacter pylori strain Hpfe039]
MKDKTFQGAFELLATPKEYLLCGVILSLLSILNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSTLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667418 MPF95_RS07140 WP_245066844.1 1495183..1496496(-) (comEC/comE3) [Helicobacter pylori strain Hpfe039]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
TCTTTTGTCAATACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTAAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTCTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCACTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTGGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTTAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCGTTTCAGGTCATAAGCTTAAGC
GCACTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGTTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment