Detailed information NTG0667414

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPF95_RS06290
• Genome accession: NZ_CP094136
• Coordinates: 1320813..1322015 (-)
• Length: 400 a.a.
• NCBI ID: WP_245066660.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe039
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1315813..1327015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF95_RS06265 (MPF95_06265)	-	1315825..1316343 (-)	519	WP_058339495.1	hypothetical protein	-
MPF95_RS06270 (MPF95_06270)	-	1316340..1317284 (-)	945	WP_245066654.1	CpaF/VirB11 family protein	-
MPF95_RS06275 (MPF95_06275)	-	1317289..1317561 (-)	273	WP_245066656.1	hypothetical protein	-
MPF95_RS06280 (MPF95_06280)	-	1317579..1318556 (-)	978	WP_245066658.1	hypothetical protein	-
MPF95_RS06285 (MPF95_06285)	-	1318569..1320829 (-)	2261	Protein_1225	collagen-like protein	-
MPF95_RS06290 (MPF95_06290)	comB10	1320813..1322015 (-)	1203	WP_245066660.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF95_RS06295 (MPF95_06295)	-	1322012..1323682 (-)	1671	WP_245066662.1	TrbG/VirB9 family P-type conjugative transfer protein	-
MPF95_RS06300 (MPF95_06300)	-	1323679..1324848 (-)	1170	WP_245066664.1	VirB8/TrbF family protein	-
MPF95_RS06305 (MPF95_06305)	-	1324841..1324975 (-)	135	WP_000738749.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44767.52 Da
• Isoelectric Point: 9.9651

>NTDB_id=667414 MPF95_RS06290 WP_245066660.1 1320813..1322015(-) (comB10) [Helicobacter pylori strain Hpfe039]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTIMHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKQAIKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVASALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=667414 MPF95_RS06290 WP_245066660.1 1320813..1322015(-) (comB10) [Helicobacter pylori strain Hpfe039]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTCGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCATGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACAAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCACAAGCTATTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCCTTAACATTGCT
TGGACTAGAATTATCACGCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTGCTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.333	97.5	0.52